Regulog DtxR - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | DtxR |
| Regulation mode: | repressor |
| Biological process: | Metal homeostasis |
| Effector: | New effector |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By TF family - DtxR
- By effector - New effector
- By pathway - Metal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Clostridiales bacterium 1_7_47_FAA | ||
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium nexile DSM 1787 | 12 | 2 |
| Clostridium scindens ATCC 35704 | 12 | 2 |
| Bacteroides pectinophilus ATCC 43243 | ||
| Blautia hansenii DSM 20583 | ||
| Bryantella formatexigens DSM 14469 | ||
| Dorea formicigenerans ATCC 27755 | 3 | 1 |
| Dorea longicatena DSM 13814 | 6 | 1 |
| Eubacterium eligens ATCC 27750 | ||
| Eubacterium rectale ATCC 33656 | ||
| Roseburia intestinalis L1-82 | ||
| Ruminococcus gnavus ATCC 29149 | ||
| Ruminococcus lactaris ATCC 29176 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| PF09605 |
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*2
Clostridium nexile DSM 1787 Gene: CLONEX_03801: Hypothetical bacterial integral membrane protein (Trep_Strep) Site: position = -50 score = 6.50187 sequence = GGTTAGTTTTAGCTAACC Gene: CLONEX_00483: Hypothetical bacterial integral membrane protein (Trep_Strep) |
*2
Clostridium scindens ATCC 35704 Site: position = -50 score = 6.06066 sequence = GGTTAGTTATTGCTAATC Gene: CLOSCI_00935: Hypothetical bacterial integral membrane protein (Trep_Strep) Site: position = -95 score = 5.82468 sequence = GGTTAGTTATAACTAACC Gene: CLOSCI_02591: Hypothetical bacterial integral membrane protein (Trep_Strep) |
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Dorea longicatena DSM 13814 Site: position = -60 score = 5.71743 sequence = GGTTAGAACACTCTAACC Gene: DORLON_00209: Hypothetical bacterial integral membrane protein (Trep_Strep) |
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Hypothetical bacterial integral membrane protein (Trep_Strep) |
| COG0619 |
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2
Clostridium nexile DSM 1787 Gene: CLONEX_03802: ABC-type cobalt transport system, permease component CbiQ and related transporters Gene: CLONEX_00482: ABC-type cobalt transport system, permease component CbiQ and related transporters |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_02592: ABC-type cobalt transport system, permease component CbiQ and related transporters Gene: CLOSCI_00934: ABC-type cobalt transport system, permease component CbiQ and related transporters |
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Gene: DORLON_00210: ABC-type cobalt transport system, permease component CbiQ and related transporters |
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ABC-type cobalt transport system, permease component CbiQ and related transporters |
| COG1123 |
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2
Clostridium nexile DSM 1787 Gene: CLONEX_03803: ATPase components of various ABC-type transport systems, contain duplicated ATPase Gene: CLONEX_00481: ATPase components of various ABC-type transport systems, contain duplicated ATPase |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_02593: ATPase components of various ABC-type transport systems, contain duplicated ATPase Gene: CLOSCI_00933: ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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Gene: DORLON_00211: ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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ATPase components of various ABC-type transport systems, contain duplicated ATPase |
| COG1132 |
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*2
Clostridium nexile DSM 1787 Site: position = -37 score = 6.17849 sequence = GGTTAGTTTTTTCTAACT Gene: CLONEX_03805: ABC-type multidrug transport system, ATPase and permease components Gene: CLONEX_00480: ABC-type multidrug transport system, ATPase and permease components |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_02594: ABC-type multidrug transport system, ATPase and permease components Gene: CLOSCI_00932: ABC-type multidrug transport system, ATPase and permease components |
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Dorea formicigenerans ATCC 27755 Site: position = -53 score = 6.3516 sequence = GGTTAGATTAAGCTAACC Gene: DORFOR_03080: ABC-type multidrug transport system, ATPase and permease components |
Gene: DORLON_00212: ABC-type multidrug transport system, ATPase and permease components |
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ABC-type multidrug transport system, ATPase and permease components |
| COG2274 |
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2
Clostridium nexile DSM 1787 Gene: CLONEX_03804: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Gene: CLONEX_00479: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_00931: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Gene: CLOSCI_02595: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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Gene: DORFOR_03079: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
Gene: DORLON_00213: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
| dtxR |
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2
Clostridium nexile DSM 1787 Gene: CLONEX_03800: Putative metal-dependent transcriptional regulator, DtxR family Gene: CLONEX_00478: Putative metal-dependent transcriptional regulator, DtxR family |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_00930: Putative metal-dependent transcriptional regulator, DtxR family Gene: CLOSCI_02596: Putative metal-dependent transcriptional regulator, DtxR family |
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Gene: DORFOR_03078: Putative metal-dependent transcriptional regulator, DtxR family |
Gene: DORLON_00214: Putative metal-dependent transcriptional regulator, DtxR family |
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Putative metal-dependent transcriptional regulator, DtxR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |