Regulog DtxR - Clostridia-3

Properties
Regulator type:	Transcription factor
Regulator family:	DtxR
Regulation mode:	repressor
Biological process:	Metal homeostasis
Effector:	New effector
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-3
By TF family - DtxR
By effector - New effector
By pathway - Metal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Clostridiales bacterium 1_7_47_FAA
Clostridium bolteae ATCC BAA-613
Clostridium nexile DSM 1787	12	2
Clostridium scindens ATCC 35704	12	2
Bacteroides pectinophilus ATCC 43243
Blautia hansenii DSM 20583
Bryantella formatexigens DSM 14469
Dorea formicigenerans ATCC 27755	3	1
Dorea longicatena DSM 13814	6	1
Eubacterium eligens ATCC 27750
Eubacterium rectale ATCC 33656
Roseburia intestinalis L1-82
Ruminococcus gnavus ATCC 29149
Ruminococcus lactaris ATCC 29176

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
PF09605	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787* Gene: CLONEX_03801: Hypothetical bacterial integral membrane protein (Trep_Strep) Site: position = -50 score = 6.50187 sequence = GGTTAGTTTTAGCTAACC Gene: CLONEX_00483: Hypothetical bacterial integral membrane protein (Trep_Strep)	2 Clostridium scindens ATCC 35704* Site: position = -50 score = 6.06066 sequence = GGTTAGTTATTGCTAATC Gene: CLOSCI_00935: Hypothetical bacterial integral membrane protein (Trep_Strep) Site: position = -95 score = 5.82468 sequence = GGTTAGTTATAACTAACC Gene: CLOSCI_02591: Hypothetical bacterial integral membrane protein (Trep_Strep)	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	Dorea formicigenerans ATCC 27755	* Dorea longicatena DSM 13814 Site: position = -60 score = 5.71743 sequence = GGTTAGAACACTCTAACC Gene: DORLON_00209: Hypothetical bacterial integral membrane protein (Trep_Strep)	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	Hypothetical bacterial integral membrane protein (Trep_Strep)
COG0619	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787 Gene: CLONEX_03802: ABC-type cobalt transport system, permease component CbiQ and related transporters Gene: CLONEX_00482: ABC-type cobalt transport system, permease component CbiQ and related transporters	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_02592: ABC-type cobalt transport system, permease component CbiQ and related transporters Gene: CLOSCI_00934: ABC-type cobalt transport system, permease component CbiQ and related transporters	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	Dorea formicigenerans ATCC 27755	Dorea longicatena DSM 13814 Gene: DORLON_00210: ABC-type cobalt transport system, permease component CbiQ and related transporters	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ABC-type cobalt transport system, permease component CbiQ and related transporters
COG1123	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787 Gene: CLONEX_03803: ATPase components of various ABC-type transport systems, contain duplicated ATPase Gene: CLONEX_00481: ATPase components of various ABC-type transport systems, contain duplicated ATPase	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_02593: ATPase components of various ABC-type transport systems, contain duplicated ATPase Gene: CLOSCI_00933: ATPase components of various ABC-type transport systems, contain duplicated ATPase	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	Dorea formicigenerans ATCC 27755	Dorea longicatena DSM 13814 Gene: DORLON_00211: ATPase components of various ABC-type transport systems, contain duplicated ATPase	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ATPase components of various ABC-type transport systems, contain duplicated ATPase
COG1132	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787* Site: position = -37 score = 6.17849 sequence = GGTTAGTTTTTTCTAACT Gene: CLONEX_03805: ABC-type multidrug transport system, ATPase and permease components Gene: CLONEX_00480: ABC-type multidrug transport system, ATPase and permease components	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_02594: ABC-type multidrug transport system, ATPase and permease components Gene: CLOSCI_00932: ABC-type multidrug transport system, ATPase and permease components	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	* Dorea formicigenerans ATCC 27755 Site: position = -53 score = 6.3516 sequence = GGTTAGATTAAGCTAACC Gene: DORFOR_03080: ABC-type multidrug transport system, ATPase and permease components	Dorea longicatena DSM 13814 Gene: DORLON_00212: ABC-type multidrug transport system, ATPase and permease components	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, ATPase and permease components
COG2274	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787 Gene: CLONEX_03804: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Gene: CLONEX_00479: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_00931: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Gene: CLOSCI_02595: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	Dorea formicigenerans ATCC 27755 Gene: DORFOR_03079: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	Dorea longicatena DSM 13814 Gene: DORLON_00213: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
dtxR	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	2 Clostridium nexile DSM 1787 Gene: CLONEX_03800: Putative metal-dependent transcriptional regulator, DtxR family Gene: CLONEX_00478: Putative metal-dependent transcriptional regulator, DtxR family	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_00930: Putative metal-dependent transcriptional regulator, DtxR family Gene: CLOSCI_02596: Putative metal-dependent transcriptional regulator, DtxR family	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583	Bryantella formatexigens DSM 14469	Dorea formicigenerans ATCC 27755 Gene: DORFOR_03078: Putative metal-dependent transcriptional regulator, DtxR family	Dorea longicatena DSM 13814 Gene: DORLON_00214: Putative metal-dependent transcriptional regulator, DtxR family	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	Putative metal-dependent transcriptional regulator, DtxR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DtxR - Clostridia-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --