Regulog CsoR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | CsoR |
| Regulation mode: | repressor |
| Biological process: | Copper resistance |
| Effector: | Copper ion, (Cu+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - CsoR
- By taxonomy - Nocardiaceae
- By TF family - CsoR
- By effector - Copper ion, (Cu+)
- By pathway - Copper resistance
| Genome | Genes | Operons |
|---|---|---|
| Rhodococcus erythropolis PR4 | 5 | 2 |
| Nocardia farcinica IFM 10152 | 3 | 2 |
| Rhodococcus opacus B4 | 4 | 2 |
| Rhodococcus sp. RHA1 | 5 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| copZ |
*
Rhodococcus erythropolis PR4 Site: position = -87 score = 5.19082 sequence = ATACCCCCTGGGGGTAC Gene: RER_43570: Putative copper chaperone CopZ |
|
*2
Rhodococcus opacus B4 Gene: ROP_33290: Putative copper chaperone CopZ Site: position = -82 score = 5.2597 sequence = ATACGGTAGGGGGGTAT Gene: ROP_pROB01-02400: Putative copper chaperone CopZ |
*
Rhodococcus sp. RHA1 Site: position = -63 score = 5.2597 sequence = ATACGGTAGGGGGGTAT Gene: RHA1_ro03535: Putative copper chaperone CopZ |
Putative copper chaperone CopZ |
| ROP_33300 |
Gene: RER_43580: Putative secreted protein |
*
Nocardia farcinica IFM 10152 Site: position = -27 score = 5.64735 sequence = GTACCCTAGGGGGGTAT Gene: nfa1610: Putative secreted protein |
2
Rhodococcus opacus B4 Gene: ROP_33300: Putative secreted protein Gene: ROP_pROB01-02390: Putative secreted protein |
Gene: RHA1_ro03536: Putative secreted protein |
Putative secreted protein |
| copA |
Gene: RER_43590: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: nfa1600: Copper-translocating P-type ATPase (EC 3.6.3.4) |
2
Rhodococcus opacus B4 Gene: ROP_33310: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: ROP_pROB01-02380: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: RHA1_ro03537: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Copper-translocating P-type ATPase (EC 3.6.3.4) |
| csoR |
Gene: RER_05710: Copper resistance transcriptional regulator CsoR, CsoR family |
*
Nocardia farcinica IFM 10152 Site: position = -60 score = 5.64735 sequence = GTACCCTAGGGGGGTAT Gene: nfa8420: Copper resistance transcriptional regulator CsoR, CsoR family |
*2
Rhodococcus opacus B4 Gene: ROP_33320: Copper resistance transcriptional regulator CsoR, CsoR family Site: position = -61 score = 4.87913 sequence = ATACCCCGGGCGGGCAT Gene: ROP_pROB01-02370: Copper resistance transcriptional regulator CsoR, CsoR family |
Gene: RHA1_ro03538: Copper resistance transcriptional regulator CsoR, CsoR family |
Copper resistance transcriptional regulator CsoR, CsoR family |
| copB |
|
|
Gene: ROP_33330: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: RHA1_ro03539: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Copper-translocating P-type ATPase (EC 3.6.3.4) |
| RER_05700 |
*
Rhodococcus erythropolis PR4 Site: position = -49 score = 5.89858 sequence = ATACCCTAGGGGGGTAT Gene: RER_05700: Hypothetical protein |
|
|
|
Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |