Regulog SdaR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | SdaR |
| Regulation mode: | activator |
| Biological process: | Glycerate utilization |
| Effector: | D-glycerate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - SdaR
- By TF family - SdaR
- By effector - D-glycerate
- By pathway - Glycerate utilization
| Genome | Genes | Operons |
|---|---|---|
| Clostridium butyricum 5521 | 2 | 1 |
| Clostridium acetobutylicum ATCC 824 | 3 | 1 |
| Clostridium beijerincki NCIMB 8052 | 2 | 1 |
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium kluyveri DSM 555 | ||
| Clostridium novyi NT | 2 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium tetani E88 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| grtP |
*
Clostridium butyricum 5521 Site: position = -120 score = 6.42725 sequence = AATTGTTCAAATGCACAAAA Gene: CBY_1134: D-glycerate transporter, GntP family |
*
Clostridium acetobutylicum ATCC 824 Site: position = -119 score = 6.61032 sequence = TTTTGTGCAATTGAACAAAA Gene: CAC2835: D-glycerate transporter, GntP family |
*
Clostridium beijerincki NCIMB 8052 Site: position = -152 score = 6.37481 sequence = TATTGTTCAAATACACAAAA Gene: Cbei_4480: D-glycerate transporter, GntP family |
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Clostridium novyi NT Site: position = -97 score = 6.37481 sequence = TATTGTGCATTTGAACAATA Gene: NT01CX_0983: D-glycerate transporter, GntP family |
*
Clostridium perfringens ATCC 13124 Site: position = -135 score = 5.72073 sequence = CTTTGTGCGTTTGCATAAAG Gene: CPF_0853: D-glycerate transporter, GntP family |
Gene: CTC00701: D-glycerate transporter, GntP family |
D-glycerate transporter, GntP family |
| garK |
Gene: CBY_1133: Glycerate kinase (EC 2.7.1.31) |
Gene: CAC2834: Glycerate kinase (EC 2.7.1.31) |
Gene: Cbei_4479: Glycerate kinase (EC 2.7.1.31) |
Gene: CBO2235: Glycerate kinase (EC 2.7.1.31) |
|
Gene: NT01CX_0984: Glycerate kinase (EC 2.7.1.31) |
Gene: CPF_0854: Glycerate kinase (EC 2.7.1.31) |
Gene: CTC00702: Glycerate kinase (EC 2.7.1.31) |
Glycerate kinase (EC 2.7.1.31) |
| sdaR |
Gene: CBY_1135: Glycerate utilization transcriptional regulator SdaR, SdaR family |
Gene: CAC2833: Glycerate utilization transcriptional regulator SdaR, SdaR family |
Gene: Cbei_4476: Glycerate utilization transcriptional regulator SdaR, SdaR family |
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Gene: NT01CX_0982: Glycerate utilization transcriptional regulator SdaR, SdaR family |
Gene: CPF_0851: Glycerate utilization transcriptional regulator SdaR, SdaR family |
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Glycerate utilization transcriptional regulator SdaR, SdaR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |