Regulog PdxR - Enterococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterococcaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Enterococcus faecalis V583 | 6 | 4 |
| Enterococcus faecium DO | 3 | 1 |
| Genes | Function | ||
|---|---|---|---|
| CRON 1. | |||
| pdxK2 |
*
Enterococcus faecalis V583 Site: position = -89 score = 8.66151 sequence = AAGTGGCTG-(10)-CTGCCAATT Gene: EF1969: Novel pyridoxal kinase, thiD family (EC 2.7.1.35) |
*
Enterococcus faecium DO Site: position = -84 score = 8.59561 sequence = AATTGGATG-(10)-ATGCCAATT Gene: EfaeDRAFT_2581: Novel pyridoxal kinase, thiD family (EC 2.7.1.35) |
Novel pyridoxal kinase, thiD family (EC 2.7.1.35) |
| pdxU2 |
Gene: EF1968: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter |
Gene: EfaeDRAFT_2582: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter |
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter |
| COG4475 |
Gene: EF1967: Hypothetical protein ywlG |
Gene: EfaeDRAFT_2583: Hypothetical protein ywlG |
Hypothetical protein ywlG |
| CRON 2. | |||
| EF1937 |
*
Enterococcus faecalis V583 Site: position = -54 score = 9.12562 sequence = AATTGGCTG-(10)-CAGTCAATT Gene: EF1937: Acetyltransferase (EC 2.3.1.-) |
|
Acetyltransferase (EC 2.3.1.-) |
| CRON 3. | |||
| pdxK |
*
Enterococcus faecalis V583 Site: position = -86 score = 9.41603 sequence = AATTGGCTG-(10)-AAGCCAATT Gene: EF0202: Novel pyridoxal kinase, ThiD family (EC 2.7.1.35) |
|
Novel pyridoxal kinase, ThiD family (EC 2.7.1.35) |
| CRON 4. | |||
| pdxR |
*
Enterococcus faecalis V583 Site: position = -43 score = 8.2985 sequence = AACTGGATT-(10)-CATCCAATT Gene: EF2426: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
Gene: EfaeDRAFT_1355: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |