Regulog PdxR - Listeriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Listeriaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Listeria innocua Clip11262 | 3 | 2 |
| Listeria monocytogenes EGD-e | 3 | 2 |
| Listeria seeligeri serovar 1/2b str. SLCC3954 | 3 | 2 |
| Listeria welshimeri serovar 6b str. SLCC5334 | 3 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pdxR |
*
Listeria innocua Clip11262 Site: position = -46 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lin2204: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
*
Listeria monocytogenes EGD-e Site: position = -48 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lmo2100: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -48 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lse_2090: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -47 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lwe2121: Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
Predicted transcriptional regulator of pyridoxine metabolism, GntR family |
| CRON 2. | |||||
| pdxS |
*
Listeria innocua Clip11262 Site: position = -105 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lin2205: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Listeria monocytogenes EGD-e Site: position = -105 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lmo2101: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -104 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lse_2091: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -105 score = 10.3923 sequence = AATTGGATG-(10)-CATCCAATT Gene: lwe2122: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| pdxT |
Gene: lin2206: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: lmo2102: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: lse_2092: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: lwe2123: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |