Regulog PdxR - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:	activator
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2	2	1
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603	2	1
Kocuria rhizophila DC2201	2	1
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
pdxS	2 Arthrobacter aurescens TC1 Gene: AAur_2306: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: AAur_0487: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	2 Arthrobacter chlorophenolicus A6 Gene: Achl_2040: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Achl_2776: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	2 Arthrobacter sp. FB24 Gene: Arth_2314: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Arth_1760: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Beutenbergia cavernae DSM 12333 Gene: Bcav_1986: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Brachybacterium faecium DSM 4810 Gene: Bfae_00350: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Brevibacterium linens BL2 Site: position = -135 score = 8.14026 sequence = ATACTGGCCT-(14)-TTTCTGGCAC-(7)-GGGCCACCGG Gene: BlinB01003388: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1819: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Janibacter sp. HTCC2649 Gene: JNB_02405: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Jonesia denitrificans DSM 20603 Site: position = -107 score = 13.093 sequence = GAACTGGTCT-(14)-TAACTGGATC-(7)-GGACCAGCCT Gene: Jden_1600: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Kocuria rhizophila DC2201 Site: position = -71 score = 8.66261 sequence = CATCTGGACC-(14)-ATTATGGCCC-(7)-GGACCACTTC Gene: KRH_01130: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Kytococcus sedentarius DSM 20547 Gene: Ksed_15370: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx10720: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Tropheryma whipplei str. Twist Gene: TW264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT	Arthrobacter aurescens TC1 Gene: AAur_2301: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	2 Arthrobacter chlorophenolicus A6 Gene: Achl_2035: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: Achl_3253: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Arthrobacter sp. FB24 Gene: Arth_2305: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Beutenbergia cavernae DSM 12333 Gene: Bcav_1988: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2 Gene: BlinB01003389: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	2 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1818: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: CMM_1119: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Janibacter sp. HTCC2649 Gene: JNB_02435: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Jonesia denitrificans DSM 20603 Gene: Jden_1601: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Kocuria rhizophila DC2201 Gene: KRH_01120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Kytococcus sedentarius DSM 20547 Gene: Ksed_15360: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx10740: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_2003: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Tropheryma whipplei str. Twist Gene: TW265: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --