Regulog YrdX3 - Rhodospirillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhodospirillales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Acetobacter pasteurianus IFO 3283-01	6	1
Azospirillum sp. B510
Gluconacetobacter diazotrophicus PAl 5	8	1
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Magnetospirillum magneticum AMB-1
Magnetospirillum magnetotacticum MS-1
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
APA01_41670	* Acetobacter pasteurianus IFO 3283-01 Site: position = -196 score = 17.7033 sequence = TTGTATGT-(14)-TTGTATGT-(45)-TTGTACTT-(10)-ACATACAA Gene: APA01_41670: hypothetical protein	Azospirillum sp. B510	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -160 score = 17.7033 sequence = TTGTTTCC-(13)-TTGTATGG-(44)-TTGTATGG-(10)-CCATACAA Gene: Gdia_2618: hypothetical protein	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	hypothetical protein
COG388	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41660: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2619: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1 Gene: Magn03001874: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41650: Biotin synthase-related radical SAM domain protein	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2620: Biotin synthase-related radical SAM domain protein	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1 Gene: Magn03001875: Biotin synthase-related radical SAM domain protein	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Biotin synthase-related radical SAM domain protein
APA01_41640	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41640: GCN5-related N-acetyltransferase	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2621: GCN5-related N-acetyltransferase	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	GCN5-related N-acetyltransferase
COG2144	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41630: AIR synthase related protein/Selenophosphate synthetase-related	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2622: AIR synthase related protein/Selenophosphate synthetase-related	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	AIR synthase related protein/Selenophosphate synthetase-related
rfaG	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41620: Glycosyltransferase	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2623: Glycosyltransferase	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Glycosyltransferase
Gdia_2624	Acetobacter pasteurianus IFO 3283-01	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2624: hypothetical protein	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	hypothetical protein
trkA	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_41610: FAD dependent oxidoreductase	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2625: FAD dependent oxidoreductase	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	FAD dependent oxidoreductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX3 - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --