Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YrdX3 - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acetobacter pasteurianus IFO 3283-01 6 1
Azospirillum sp. B510
Gluconacetobacter diazotrophicus PAl 5 8 1
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Magnetospirillum magneticum AMB-1
Magnetospirillum magnetotacticum MS-1
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
APA01_41670
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -196
score = 17.7033
sequence = TTGTATGT-(14)-TTGTATGT-(45)-TTGTACTT-(10)-ACATACAA

Gene: APA01_41670: hypothetical protein
 
Azospirillum sp. B510
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -160
score = 17.7033
sequence = TTGTTTCC-(13)-TTGTATGG-(44)-TTGTATGG-(10)-CCATACAA

Gene: Gdia_2618: hypothetical protein
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
hypothetical protein
COG388
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41660: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2619: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03001874: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41650: Biotin synthase-related radical SAM domain protein
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2620: Biotin synthase-related radical SAM domain protein
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03001875: Biotin synthase-related radical SAM domain protein
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
Biotin synthase-related radical SAM domain protein
APA01_41640
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41640: GCN5-related N-acetyltransferase
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2621: GCN5-related N-acetyltransferase
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
GCN5-related N-acetyltransferase
COG2144
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41630: AIR synthase related protein/Selenophosphate synthetase-related
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2622: AIR synthase related protein/Selenophosphate synthetase-related
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
AIR synthase related protein/Selenophosphate synthetase-related
rfaG
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41620: Glycosyltransferase
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2623: Glycosyltransferase
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
Glycosyltransferase
Gdia_2624
 
Acetobacter pasteurianus IFO 3283-01
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2624: hypothetical protein
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
hypothetical protein
trkA
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_41610: FAD dependent oxidoreductase
 
Azospirillum sp. B510
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2625: FAD dependent oxidoreductase
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
FAD dependent oxidoreductase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD