Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MdcY - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Gluconacetobacter diazotrophicus PAl 5
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Magnetospirillum magneticum AMB-1 4 2
Magnetospirillum magnetotacticum MS-1 4 2
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170
Acetobacter pasteurianus IFO 3283-01
Azospirillum sp. B510
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
mdcY
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
*
Magnetospirillum magneticum AMB-1

Site:
position = -107
score = 4.08579
sequence = TTGTATACGT

Site:
position = -41
score = 3.89576
sequence = ATGTATACTC

Gene: amb3585: Transcriptional regulator of malonate metabolism, GntR family
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -106
score = 4.08579
sequence = TTGTATACGT

Site:
position = -40
score = 3.89576
sequence = ATGTATACTC

Gene: Magn03010729: Transcriptional regulator of malonate metabolism, GntR family
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
 
Acetobacter pasteurianus IFO 3283-01
 
Azospirillum sp. B510
Transcriptional regulator of malonate metabolism, GntR family
 
CRON 2.
matB
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
*
Magnetospirillum magneticum AMB-1

Site:
position = 25
score = 4.38112
sequence = TTGGATACAA

Gene: amb3584: Malonyl-CoA synthase
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -80
score = 4.38112
sequence = TTGGATACAA

Gene: Magn03010728: Malonyl-CoA synthase
 
Rhodospirillum centenum SW

Gene: RC1_2325: Malonyl-CoA synthase
 
Rhodospirillum rubrum ATCC 11170
 
Acetobacter pasteurianus IFO 3283-01
 
Azospirillum sp. B510

Gene: AZL_e04090: Malonyl-CoA synthase
Malonyl-CoA synthase
amb2561
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1

Gene: amb3583: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03010727: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
 
Acetobacter pasteurianus IFO 3283-01
 
Azospirillum sp. B510
Enoyl-CoA hydratase (EC 4.2.1.17)
fadB
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Magnetospirillum magneticum AMB-1

Gene: amb3582: Dehydrogenase with different specificities
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03010726: Dehydrogenase with different specificities
 
Rhodospirillum centenum SW

Gene: RC1_2405: Dehydrogenase with different specificities
 
Rhodospirillum rubrum ATCC 11170
 
Acetobacter pasteurianus IFO 3283-01
 
Azospirillum sp. B510

Gene: AZL_001940: Dehydrogenase with different specificities
Dehydrogenase with different specificities
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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