Regulog MdcY - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Malonate metabolism
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - GntR/Others
By pathway - Malonate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Azoarcus sp. EbN1
Dechloromonas aromatica RCB	12	2
Thauera sp. MZ1T

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
matP	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	* Dechloromonas aromatica RCB Site: position = -104 score = 4.09541 sequence = ATGAATACAA Site: position = -125 score = 4.98788 sequence = TTGTATACAC Gene: Daro_4023: TRAP malonate transporter, periplasmic subunit	Thauera sp. MZ1T	TRAP malonate transporter, periplasmic subunit
matQ	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4022: TRAP malonate transporter, small permease subunit	Thauera sp. MZ1T	TRAP malonate transporter, small permease subunit
matM	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4021: TRAP malonate transporter, large permease subunit	Thauera sp. MZ1T	TRAP malonate transporter, large permease subunit
mdcA	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4020: Malonate decarboxylase alpha subunit	Thauera sp. MZ1T	Malonate decarboxylase alpha subunit
mdcC	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4019: Malonate decarboxylase delta subunit	Thauera sp. MZ1T	Malonate decarboxylase delta subunit
mdcD	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4018: Malonate decarboxylase beta subunit	Thauera sp. MZ1T	Malonate decarboxylase beta subunit
mdcE	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4017: Malonate decarboxylase gamma subunit	Thauera sp. MZ1T	Malonate decarboxylase gamma subunit
mdcG	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4016: Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)	Thauera sp. MZ1T	Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
mdcB	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4015: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Thauera sp. MZ1T	Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcH	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4014: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Thauera sp. MZ1T	Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
Daro_4013	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB Gene: Daro_4013: Protein of unknown function DUF81, putative permease	Thauera sp. MZ1T	Protein of unknown function DUF81, putative permease

CRON 2.
mdcY	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	* Dechloromonas aromatica RCB Site: position = -49 score = 4.98788 sequence = GTGTATACAA Site: position = -70 score = 4.09541 sequence = TTGTATTCAT Gene: Daro_4024: Transcriptional regulator of malonate metabolism, GntR family	Thauera sp. MZ1T	Transcriptional regulator of malonate metabolism, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MdcY - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --