Regulog MdcY - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Malonate metabolism
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/Others
By pathway - Malonate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571	6	2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110	11	3
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	4	2
Rhizobium leguminosarum bv. viciae 3841	4	2
Rhizobium sp. NGR234	4	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	5	2
Xanthobacter autotrophicus Py2	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
mdcY	Agrobacterium tumefaciens str. C58 (Cereon)	* Azorhizobium caulinodans ORS 571 Site: position = -42 score = 4.32855 sequence = ATGTATGCAA Gene: AZC_3296: Transcriptional regulator of malonate metabolism, GntR family	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -43 score = 4.79785 sequence = GTGTATACAC Gene: RHE_CH00919: Transcriptional regulator of malonate metabolism, GntR family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -25 score = 4.98788 sequence = GTGTATACAA Gene: RL0989: Transcriptional regulator of malonate metabolism, GntR family	* Rhizobium sp. NGR234 Site: position = -43 score = 4.98788 sequence = GTGTATACAA Gene: NGR_b02870: Transcriptional regulator of malonate metabolism, GntR family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -50 score = 5.17791 sequence = TTGTATACAA Gene: SMa0160: Transcriptional regulator of malonate metabolism, GntR family	* Xanthobacter autotrophicus Py2 Site: position = -70 score = 4.61426 sequence = TTGTATGCAA Gene: Xaut_0520: Transcriptional regulator of malonate metabolism, GntR family	Transcriptional regulator of malonate metabolism, GntR family

CRON 2.
matA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -125 score = 4.79785 sequence = GTGTATACAC Gene: RHE_CH00920: Malonyl-CoA decarboxylase (EC 4.1.1.9)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -144 score = 4.98788 sequence = TTGTATACAC Gene: RL0990: Malonyl-CoA decarboxylase (EC 4.1.1.9)	* Rhizobium sp. NGR234 Site: position = -136 score = 4.98788 sequence = TTGTATACAC Gene: NGR_b02860: Malonyl-CoA decarboxylase (EC 4.1.1.9)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonyl-CoA decarboxylase (EC 4.1.1.9)
matB	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr0509: Malonyl-CoA synthase	Bradyrhizobium sp. BTAi1 Gene: BBta_0226: Malonyl-CoA synthase	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1 Gene: Meso_1586: Malonyl-CoA synthase	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2797: Malonyl-CoA synthase	Rhizobium etli CFN 42 Gene: RHE_CH00921: Malonyl-CoA synthase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0991: Malonyl-CoA synthase	Rhizobium sp. NGR234 Gene: NGR_b02850: Malonyl-CoA synthase	Rhodopseudomonas palustris CGA009 Gene: RPA0221: Malonyl-CoA synthase	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonyl-CoA synthase
matC	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH00922: malonate transporter	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0992: malonate transporter	Rhizobium sp. NGR234 Gene: NGR_b02840: malonate transporter	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	malonate transporter

CRON 3.
matA	Agrobacterium tumefaciens str. C58 (Cereon)	* Azorhizobium caulinodans ORS 571 Site: position = -174 score = 4.32855 sequence = TTGCATACAT Gene: AZC_3297: Malonyl-CoA decarboxylase (EC 4.1.1.9)	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr6729: Malonyl-CoA decarboxylase (EC 4.1.1.9)	Bradyrhizobium sp. BTAi1 Gene: BBta_6289: Malonyl-CoA decarboxylase (EC 4.1.1.9)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0150: Malonyl-CoA decarboxylase (EC 4.1.1.9)	* Xanthobacter autotrophicus Py2 Site: position = -235 score = 4.61426 sequence = TTGCATACAA Gene: Xaut_0519: Malonyl-CoA decarboxylase (EC 4.1.1.9)	Malonyl-CoA decarboxylase (EC 4.1.1.9)
matB	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_3298: Malonyl-CoA synthase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_0518: Malonyl-CoA synthase	Malonyl-CoA synthase
matP	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_3299: TRAP malonate transporter, periplasmic subunit	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll4430: TRAP malonate transporter, periplasmic subunit	Bradyrhizobium sp. BTAi1 Gene: BBta_4052: TRAP malonate transporter, periplasmic subunit	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2543: TRAP malonate transporter, periplasmic subunit	* Sinorhizobium meliloti 1021 Site: position = -88 score = 5.17791 sequence = TTGTATACAA Gene: SMa0157: TRAP malonate transporter, periplasmic subunit	Xanthobacter autotrophicus Py2	TRAP malonate transporter, periplasmic subunit
matQ	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_3300: TRAP malonate transporter, small permease subunit	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll4429: TRAP malonate transporter, small permease subunit	Bradyrhizobium sp. BTAi1 Gene: BBta_4051: TRAP malonate transporter, small permease subunit	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2542: TRAP malonate transporter, small permease subunit	Sinorhizobium meliloti 1021 Gene: SMa0155: TRAP malonate transporter, small permease subunit	Xanthobacter autotrophicus Py2	TRAP malonate transporter, small permease subunit
matM	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_3301: TRAP malonate transporter, large permease subunit	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll4428: TRAP malonate transporter, large permease subunit	Bradyrhizobium sp. BTAi1 Gene: BBta_4050: TRAP malonate transporter, large permease subunit	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2541: TRAP malonate transporter, large permease subunit	Sinorhizobium meliloti 1021 Gene: SMa0151: TRAP malonate transporter, large permease subunit	Xanthobacter autotrophicus Py2	TRAP malonate transporter, large permease subunit

CRON 4.
mdcA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -82 score = 3.99144 sequence = GCGTATACAC Site: position = -42 score = 3.57471 sequence = TTAGATACAA Gene: bll1276: Malonate decarboxylase alpha subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate decarboxylase alpha subunit

CRON 5.
mdcL	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -121 score = 3.99144 sequence = GTGTATACGC Site: position = -161 score = 3.57471 sequence = TTGTATCTAA Gene: blr1277: Malonate transporter, MadL subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate transporter, MadL subunit
mdcM	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1278: Malonate transporter, MadM subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate transporter, MadM subunit
mdcY	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1279: Transcriptional regulator of malonate metabolism, GntR family	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Transcriptional regulator of malonate metabolism, GntR family

CRON 6.
mdcC	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -46 score = 3.61782 sequence = TTGTACGCAC Gene: bll0269: Malonate decarboxylase delta subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate decarboxylase delta subunit
mdcD	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110 Gene: bll1275: Malonate decarboxylase beta subunit Gene: bll0268: Malonate decarboxylase beta subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate decarboxylase beta subunit
mdcE	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110 Gene: bll1274: Malonate decarboxylase gamma subunit Gene: bll0267: Malonate decarboxylase gamma subunit	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonate decarboxylase gamma subunit
mdcG	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll0266: Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)
mdcB	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110 Gene: bll1272: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) Gene: bll0265: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcF	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll0264: malonate transporter	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	malonate transporter
mdcH	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	2 Bradyrhizobium japonicum USDA 110 Gene: bll0263: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) Gene: bll1271: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MdcY - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --