Regulog MdcY - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Malonate metabolism |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/Others
- By pathway - Malonate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | 6 | 2 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 11 | 3 |
| Bradyrhizobium sp. BTAi1 | ||
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | 4 | 2 |
| Rhizobium leguminosarum bv. viciae 3841 | 4 | 2 |
| Rhizobium sp. NGR234 | 4 | 2 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | 5 | 2 |
| Xanthobacter autotrophicus Py2 | 3 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| mdcY |
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Azorhizobium caulinodans ORS 571 Site: position = -42 score = 4.32855 sequence = ATGTATGCAA Gene: AZC_3296: Transcriptional regulator of malonate metabolism, GntR family |
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Rhizobium etli CFN 42 Site: position = -43 score = 4.79785 sequence = GTGTATACAC Gene: RHE_CH00919: Transcriptional regulator of malonate metabolism, GntR family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -25 score = 4.98788 sequence = GTGTATACAA Gene: RL0989: Transcriptional regulator of malonate metabolism, GntR family |
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Rhizobium sp. NGR234 Site: position = -43 score = 4.98788 sequence = GTGTATACAA Gene: NGR_b02870: Transcriptional regulator of malonate metabolism, GntR family |
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Sinorhizobium meliloti 1021 Site: position = -50 score = 5.17791 sequence = TTGTATACAA Gene: SMa0160: Transcriptional regulator of malonate metabolism, GntR family |
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Xanthobacter autotrophicus Py2 Site: position = -70 score = 4.61426 sequence = TTGTATGCAA Gene: Xaut_0520: Transcriptional regulator of malonate metabolism, GntR family |
Transcriptional regulator of malonate metabolism, GntR family |
| CRON 2. | ||||||||||||||||
| matA |
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Rhizobium etli CFN 42 Site: position = -125 score = 4.79785 sequence = GTGTATACAC Gene: RHE_CH00920: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -144 score = 4.98788 sequence = TTGTATACAC Gene: RL0990: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Rhizobium sp. NGR234 Site: position = -136 score = 4.98788 sequence = TTGTATACAC Gene: NGR_b02860: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Malonyl-CoA decarboxylase (EC 4.1.1.9) |
| matB |
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Gene: blr0509: Malonyl-CoA synthase |
Gene: BBta_0226: Malonyl-CoA synthase |
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Gene: Meso_1586: Malonyl-CoA synthase |
Gene: Nwi_2797: Malonyl-CoA synthase |
Gene: RHE_CH00921: Malonyl-CoA synthase |
Gene: RL0991: Malonyl-CoA synthase |
Gene: NGR_b02850: Malonyl-CoA synthase |
Gene: RPA0221: Malonyl-CoA synthase |
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Malonyl-CoA synthase |
| matC |
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Gene: RHE_CH00922: malonate transporter |
Gene: RL0992: malonate transporter |
Gene: NGR_b02840: malonate transporter |
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malonate transporter |
| CRON 3. | ||||||||||||||||
| matA |
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Azorhizobium caulinodans ORS 571 Site: position = -174 score = 4.32855 sequence = TTGCATACAT Gene: AZC_3297: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Gene: blr6729: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
Gene: BBta_6289: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Gene: SMa0150: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
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Xanthobacter autotrophicus Py2 Site: position = -235 score = 4.61426 sequence = TTGCATACAA Gene: Xaut_0519: Malonyl-CoA decarboxylase (EC 4.1.1.9) |
Malonyl-CoA decarboxylase (EC 4.1.1.9) |
| matB |
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Gene: AZC_3298: Malonyl-CoA synthase |
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Gene: Xaut_0518: Malonyl-CoA synthase |
Malonyl-CoA synthase |
| matP |
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Gene: AZC_3299: TRAP malonate transporter, periplasmic subunit |
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Gene: bll4430: TRAP malonate transporter, periplasmic subunit |
Gene: BBta_4052: TRAP malonate transporter, periplasmic subunit |
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Gene: RPA2543: TRAP malonate transporter, periplasmic subunit |
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Sinorhizobium meliloti 1021 Site: position = -88 score = 5.17791 sequence = TTGTATACAA Gene: SMa0157: TRAP malonate transporter, periplasmic subunit |
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TRAP malonate transporter, periplasmic subunit |
| matQ |
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Gene: AZC_3300: TRAP malonate transporter, small permease subunit |
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Gene: bll4429: TRAP malonate transporter, small permease subunit |
Gene: BBta_4051: TRAP malonate transporter, small permease subunit |
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Gene: RPA2542: TRAP malonate transporter, small permease subunit |
Gene: SMa0155: TRAP malonate transporter, small permease subunit |
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TRAP malonate transporter, small permease subunit |
| matM |
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Gene: AZC_3301: TRAP malonate transporter, large permease subunit |
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Gene: bll4428: TRAP malonate transporter, large permease subunit |
Gene: BBta_4050: TRAP malonate transporter, large permease subunit |
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Gene: RPA2541: TRAP malonate transporter, large permease subunit |
Gene: SMa0151: TRAP malonate transporter, large permease subunit |
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TRAP malonate transporter, large permease subunit |
| CRON 4. | ||||||||||||||||
| mdcA |
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Bradyrhizobium japonicum USDA 110 Site: position = -82 score = 3.99144 sequence = GCGTATACAC Site: position = -42 score = 3.57471 sequence = TTAGATACAA Gene: bll1276: Malonate decarboxylase alpha subunit |
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Malonate decarboxylase alpha subunit |
| CRON 5. | ||||||||||||||||
| mdcL |
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Bradyrhizobium japonicum USDA 110 Site: position = -121 score = 3.99144 sequence = GTGTATACGC Site: position = -161 score = 3.57471 sequence = TTGTATCTAA Gene: blr1277: Malonate transporter, MadL subunit |
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Malonate transporter, MadL subunit |
| mdcM |
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Gene: blr1278: Malonate transporter, MadM subunit |
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Malonate transporter, MadM subunit |
| mdcY |
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Gene: blr1279: Transcriptional regulator of malonate metabolism, GntR family |
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Transcriptional regulator of malonate metabolism, GntR family |
| CRON 6. | ||||||||||||||||
| mdcC |
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Bradyrhizobium japonicum USDA 110 Site: position = -46 score = 3.61782 sequence = TTGTACGCAC Gene: bll0269: Malonate decarboxylase delta subunit |
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Malonate decarboxylase delta subunit |
| mdcD |
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Bradyrhizobium japonicum USDA 110 Gene: bll1275: Malonate decarboxylase beta subunit Gene: bll0268: Malonate decarboxylase beta subunit |
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Malonate decarboxylase beta subunit |
| mdcE |
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Bradyrhizobium japonicum USDA 110 Gene: bll1274: Malonate decarboxylase gamma subunit Gene: bll0267: Malonate decarboxylase gamma subunit |
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Malonate decarboxylase gamma subunit |
| mdcG |
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Gene: bll0266: Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) |
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Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) |
| mdcB |
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Bradyrhizobium japonicum USDA 110 Gene: bll1272: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) Gene: bll0265: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) |
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Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) |
| mdcF |
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Gene: bll0264: malonate transporter |
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malonate transporter |
| mdcH |
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Bradyrhizobium japonicum USDA 110 Gene: bll0263: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) Gene: bll1271: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) |
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Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |