Regulog UxuR2 - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 2 | 1 |
| Bordetella bronchiseptica RB50 | 8 | 1 |
| Bordetella petrii DSM 12804 | 20 | 4 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| uxuR2-2 |
|
|
*
Bordetella petrii DSM 12804 Site: position = -40 score = 5.11106 sequence = AAAGTGGTAAGGCCACTTT Gene: Bpet3949: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| gutB/tdh |
|
|
Gene: Bpet3948: L-idonate 5-dehydrogenase |
L-idonate 5-dehydrogenase |
| dctP |
|
|
Gene: Bpet3947: TRAP C4-dicarboxylate-transporter, periplasmic binding protein |
TRAP C4-dicarboxylate-transporter, periplasmic binding protein |
| dctM |
|
|
Gene: Bpet3946: TRAP C4-dicarboxylate transporter, small permease component |
TRAP C4-dicarboxylate transporter, small permease component |
| dctQ |
|
|
Gene: Bpet3945: TRAP C4-dicarboxylate transporter, large permease component |
TRAP C4-dicarboxylate transporter, large permease component |
| fabG |
|
|
Gene: Bpet3944: oxidoreductase |
oxidoreductase |
| mhpD |
Gene: BAV0555: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase |
|
Gene: Bpet3943: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase |
2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase |
| uxaA |
|
|
Gene: Bpet3942: Altronate/galactarate dehydratase |
Altronate/galactarate dehydratase |
| COG4948 |
|
|
Gene: Bpet3941: Mandelate racemase/muconate lactonizing enzyme |
Mandelate racemase/muconate lactonizing enzyme |
| uxuA |
|
|
Gene: Bpet3940: Altronate dehydrogenase |
Altronate dehydrogenase |
| CRON 2. | ||||
| dgkA |
Gene: BAV0577: Diacylglycerol kinase (EC 2.7.1.107) |
Gene: BB0959: Diacylglycerol kinase (EC 2.7.1.107) |
*
Bordetella petrii DSM 12804 Site: position = -151 score = 5.11106 sequence = AAAGTGGCCTTACCACTTT Gene: Bpet3950: Diacylglycerol kinase (EC 2.7.1.107) |
Diacylglycerol kinase (EC 2.7.1.107) |
| CRON 3. | ||||
| uxuR2 |
*
Bordetella avium 197N Site: position = -40 score = 4.59671 sequence = CCAGTGGCCTGACCACTGA Gene: BAV1879: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
*
Bordetella bronchiseptica RB50 Site: position = -49 score = 4.72419 sequence = TTAGTGGCCTGACCACTGG Gene: BB2654: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
*
Bordetella petrii DSM 12804 Site: position = -40 score = 4.72419 sequence = TCAGTGGCCTGACCACTAG Gene: Bpet2346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| dctP |
|
Gene: BB2653: TRAP-type C4-dicarboxylate transport system, periplasmic component |
Gene: Bpet2345: TRAP-type C4-dicarboxylate transport system, periplasmic component |
TRAP-type C4-dicarboxylate transport system, periplasmic component |
| dctM |
|
Gene: BB2652: TRAP C4-dicarboxylate transport system, small permease component |
Gene: Bpet2344: TRAP C4-dicarboxylate transport system, small permease component |
TRAP C4-dicarboxylate transport system, small permease component |
| dctQ |
|
Gene: BB2651: TRAP C4-dicarboxylate transport system, large permease component |
Gene: Bpet2343: TRAP C4-dicarboxylate transport system, large permease component |
TRAP C4-dicarboxylate transport system, large permease component |
| citE |
|
Gene: BB2650: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Bpet2342: Citrate lyase beta chain (EC 4.1.3.6) |
Citrate lyase beta chain (EC 4.1.3.6) |
| ilvG |
Gene: BAV1880: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit |
Gene: BB2649: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit |
Gene: Bpet2341: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit |
COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit |
| amaB |
|
Gene: BB2648: N-carbamoyl-L-amino acid amidohydrolase |
Gene: Bpet2340: N-carbamoyl-L-amino acid amidohydrolase |
N-carbamoyl-L-amino acid amidohydrolase |
| aldH |
|
Gene: BB2647: Aldehyde dehydrogenase (EC 1.2.1.3) |
Gene: Bpet2339: Aldehyde dehydrogenase (EC 1.2.1.3) |
Aldehyde dehydrogenase (EC 1.2.1.3) |
| CRON 4. | ||||
| Bpet2347 |
|
|
*
Bordetella petrii DSM 12804 Site: position = -138 score = 4.72419 sequence = CTAGTGGTCAGGCCACTGA Gene: Bpet2347: probable short-chain dehydrogenase |
probable short-chain dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |