Regulog UxuR2 - Alcaligenaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Alcaligenaceae
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bordetella avium 197N	2	1
Bordetella bronchiseptica RB50	8	1
Bordetella petrii DSM 12804	20	4

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Genes				Function

CRON 1.
uxuR2-2	Bordetella avium 197N	Bordetella bronchiseptica RB50	* Bordetella petrii DSM 12804 Site: position = -40 score = 5.11106 sequence = AAAGTGGTAAGGCCACTTT Gene: Bpet3949: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
gutB/tdh	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3948: L-idonate 5-dehydrogenase	L-idonate 5-dehydrogenase
dctP	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3947: TRAP C4-dicarboxylate-transporter, periplasmic binding protein	TRAP C4-dicarboxylate-transporter, periplasmic binding protein
dctM	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3946: TRAP C4-dicarboxylate transporter, small permease component	TRAP C4-dicarboxylate transporter, small permease component
dctQ	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3945: TRAP C4-dicarboxylate transporter, large permease component	TRAP C4-dicarboxylate transporter, large permease component
fabG	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3944: oxidoreductase	oxidoreductase
mhpD	Bordetella avium 197N Gene: BAV0555: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3943: 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
uxaA	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3942: Altronate/galactarate dehydratase	Altronate/galactarate dehydratase
COG4948	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3941: Mandelate racemase/muconate lactonizing enzyme	Mandelate racemase/muconate lactonizing enzyme
uxuA	Bordetella avium 197N	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804 Gene: Bpet3940: Altronate dehydrogenase	Altronate dehydrogenase

CRON 2.
dgkA	Bordetella avium 197N Gene: BAV0577: Diacylglycerol kinase (EC 2.7.1.107)	Bordetella bronchiseptica RB50 Gene: BB0959: Diacylglycerol kinase (EC 2.7.1.107)	* Bordetella petrii DSM 12804 Site: position = -151 score = 5.11106 sequence = AAAGTGGCCTTACCACTTT Gene: Bpet3950: Diacylglycerol kinase (EC 2.7.1.107)	Diacylglycerol kinase (EC 2.7.1.107)

CRON 3.
uxuR2	* Bordetella avium 197N Site: position = -40 score = 4.59671 sequence = CCAGTGGCCTGACCACTGA Gene: BAV1879: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	* Bordetella bronchiseptica RB50 Site: position = -49 score = 4.72419 sequence = TTAGTGGCCTGACCACTGG Gene: BB2654: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	* Bordetella petrii DSM 12804 Site: position = -40 score = 4.72419 sequence = TCAGTGGCCTGACCACTAG Gene: Bpet2346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2653: TRAP-type C4-dicarboxylate transport system, periplasmic component	Bordetella petrii DSM 12804 Gene: Bpet2345: TRAP-type C4-dicarboxylate transport system, periplasmic component	TRAP-type C4-dicarboxylate transport system, periplasmic component
dctM	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2652: TRAP C4-dicarboxylate transport system, small permease component	Bordetella petrii DSM 12804 Gene: Bpet2344: TRAP C4-dicarboxylate transport system, small permease component	TRAP C4-dicarboxylate transport system, small permease component
dctQ	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2651: TRAP C4-dicarboxylate transport system, large permease component	Bordetella petrii DSM 12804 Gene: Bpet2343: TRAP C4-dicarboxylate transport system, large permease component	TRAP C4-dicarboxylate transport system, large permease component
citE	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2650: Citrate lyase beta chain (EC 4.1.3.6)	Bordetella petrii DSM 12804 Gene: Bpet2342: Citrate lyase beta chain (EC 4.1.3.6)	Citrate lyase beta chain (EC 4.1.3.6)
ilvG	Bordetella avium 197N Gene: BAV1880: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit	Bordetella bronchiseptica RB50 Gene: BB2649: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit	Bordetella petrii DSM 12804 Gene: Bpet2341: COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit	COG0028: Thiamine pyrophosphate-requiring enzymes/acetolactate synthase large subunit
amaB	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2648: N-carbamoyl-L-amino acid amidohydrolase	Bordetella petrii DSM 12804 Gene: Bpet2340: N-carbamoyl-L-amino acid amidohydrolase	N-carbamoyl-L-amino acid amidohydrolase
aldH	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB2647: Aldehyde dehydrogenase (EC 1.2.1.3)	Bordetella petrii DSM 12804 Gene: Bpet2339: Aldehyde dehydrogenase (EC 1.2.1.3)	Aldehyde dehydrogenase (EC 1.2.1.3)

CRON 4.
Bpet2347	Bordetella avium 197N	Bordetella bronchiseptica RB50	* Bordetella petrii DSM 12804 Site: position = -138 score = 4.72419 sequence = CTAGTGGTCAGGCCACTGA Gene: Bpet2347: probable short-chain dehydrogenase	probable short-chain dehydrogenase

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR2 - Alcaligenaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --