Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SO1578 - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Glutathione metabolism
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 3 2
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3 3 2
Shewanella sp MR-4 3 2
Shewanella sp MR-7 3 2
Shewanella baltica OS155 3 2
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B 3 2
Shewanella loihica PV-4 2 2
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SO1577
*
Shewanella oneidensis MR-1

Site:
position = -63
score = 6.63263
sequence = CTAACCGATCGTTCCGTTAA

Gene: SO_1577: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -63
score = 6.63263
sequence = CTAACCGATCGTTCCGTTAA

Gene: Shewana3_2865: Glutathione S-transferase (EC 2.5.1.18)
*
Shewanella sp MR-4

Site:
position = -63
score = 6.63263
sequence = CTAACCGATCGTTCCGTTAA

Gene: Shewmr4_2695: Glutathione S-transferase (EC 2.5.1.18)
*
Shewanella sp MR-7

Site:
position = -63
score = 6.69948
sequence = CTAACCGAACGTTCCGTTAA

Gene: Shewmr7_2763: Glutathione S-transferase (EC 2.5.1.18)
*
Shewanella baltica OS155

Site:
position = -75
score = 6.63263
sequence = CTAACCGATCGTTCCGTTAA

Site:
position = -110
score = 4.9936
sequence = TTGACTGATCGTTTAGATAT

Gene: Sbal_1394: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -31
score = 6.23463
sequence = CTAACCGATCGTTCAGATAA

Site:
position = -66
score = 5.47386
sequence = TTGACCGTTCGTTCAGTTAT

Gene: Sama_1088: Glutathione S-transferase (EC 2.5.1.18)
*
Shewanella loihica PV-4

Site:
position = -79
score = 5.60527
sequence = CTAAACGAGCGTTCAGTTAA

Site:
position = -114
score = 6.10063
sequence = TTGACCGAACGTTCAGTTAT

Gene: Shew_2730: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -62
score = 6.57122
sequence = CTAACCGATCGTTCAGTTAA

Site:
position = -97
score = 4.99894
sequence = TTGACCGAACGTTTAGCTAT

Gene: Swoo_3434: Glutathione S-transferase (EC 2.5.1.18)
Glutathione S-transferase (EC 2.5.1.18)
SO1576
 
Shewanella oneidensis MR-1

Gene: SO_1576: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1306: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella sp W3-18-1

Gene: Sputw3181_2797: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella sp ANA-3

Gene: Shewana3_2866: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella sp MR-4

Gene: Shewmr4_2696: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella sp MR-7

Gene: Shewmr7_2764: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella baltica OS155

Gene: Sbal_1393: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B

Gene: Sama_1087: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3292: Glutathione S-transferase (EC 2.5.1.18)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3435: Glutathione S-transferase (EC 2.5.1.18)
Glutathione S-transferase (EC 2.5.1.18)
 
CRON 2.
SO1578
*
Shewanella oneidensis MR-1

Site:
position = -112
score = 6.63263
sequence = TTAACGGAACGATCGGTTAG

Gene: SO_1578: Transcriptional regulator, TetR family
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -112
score = 6.63263
sequence = TTAACGGAACGATCGGTTAG

Gene: Shewana3_2864: Transcriptional regulator, TetR family
*
Shewanella sp MR-4

Site:
position = -112
score = 6.63263
sequence = TTAACGGAACGATCGGTTAG

Gene: Shewmr4_2694: Transcriptional regulator, TetR family
*
Shewanella sp MR-7

Site:
position = -111
score = 6.69948
sequence = TTAACGGAACGTTCGGTTAG

Gene: Shewmr7_2762: Transcriptional regulator, TetR family
*
Shewanella baltica OS155

Site:
position = -122
score = 4.9936
sequence = ATATCTAAACGATCAGTCAA

Site:
position = -157
score = 6.63263
sequence = TTAACGGAACGATCGGTTAG

Gene: Sbal_1395: Transcriptional regulator, TetR family
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -68
score = 5.47386
sequence = ATAACTGAACGAACGGTCAA

Site:
position = -103
score = 6.23463
sequence = TTATCTGAACGATCGGTTAG

Gene: Sama_1089: Transcriptional regulator, TetR family
*
Shewanella loihica PV-4

Site:
position = -66
score = 6.10063
sequence = ATAACTGAACGTTCGGTCAA

Site:
position = -101
score = 5.60527
sequence = TTAACTGAACGCTCGTTTAG

Gene: Shew_2729: Transcriptional regulator, TetR family
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -90
score = 6.57122
sequence = TTAACTGAACGATCGGTTAG

Site:
position = -55
score = 4.99894
sequence = ATAGCTAAACGTTCGGTCAA

Gene: Swoo_3433: Transcriptional regulator, TetR family
Transcriptional regulator, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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