Regulog SO1578 - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Glutathione metabolism |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - TetR
- By pathway - Glutathione metabolism
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 3 | 2 |
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | 3 | 2 |
| Shewanella sp MR-4 | 3 | 2 |
| Shewanella sp MR-7 | 3 | 2 |
| Shewanella baltica OS155 | 3 | 2 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | 3 | 2 |
| Shewanella loihica PV-4 | 2 | 2 |
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 | 3 | 2 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| SO1577 |
*
Shewanella oneidensis MR-1 Site: position = -63 score = 6.63263 sequence = CTAACCGATCGTTCCGTTAA Gene: SO_1577: Glutathione S-transferase (EC 2.5.1.18) |
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*
Shewanella sp ANA-3 Site: position = -63 score = 6.63263 sequence = CTAACCGATCGTTCCGTTAA Gene: Shewana3_2865: Glutathione S-transferase (EC 2.5.1.18) |
*
Shewanella sp MR-4 Site: position = -63 score = 6.63263 sequence = CTAACCGATCGTTCCGTTAA Gene: Shewmr4_2695: Glutathione S-transferase (EC 2.5.1.18) |
*
Shewanella sp MR-7 Site: position = -63 score = 6.69948 sequence = CTAACCGAACGTTCCGTTAA Gene: Shewmr7_2763: Glutathione S-transferase (EC 2.5.1.18) |
*
Shewanella baltica OS155 Site: position = -75 score = 6.63263 sequence = CTAACCGATCGTTCCGTTAA Site: position = -110 score = 4.9936 sequence = TTGACTGATCGTTTAGATAT Gene: Sbal_1394: Glutathione S-transferase (EC 2.5.1.18) |
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*
Shewanella amazonensis SB2B Site: position = -31 score = 6.23463 sequence = CTAACCGATCGTTCAGATAA Site: position = -66 score = 5.47386 sequence = TTGACCGTTCGTTCAGTTAT Gene: Sama_1088: Glutathione S-transferase (EC 2.5.1.18) |
*
Shewanella loihica PV-4 Site: position = -79 score = 5.60527 sequence = CTAAACGAGCGTTCAGTTAA Site: position = -114 score = 6.10063 sequence = TTGACCGAACGTTCAGTTAT Gene: Shew_2730: Glutathione S-transferase (EC 2.5.1.18) |
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*
Shewanella woodyi ATCC 51908 Site: position = -62 score = 6.57122 sequence = CTAACCGATCGTTCAGTTAA Site: position = -97 score = 4.99894 sequence = TTGACCGAACGTTTAGCTAT Gene: Swoo_3434: Glutathione S-transferase (EC 2.5.1.18) |
Glutathione S-transferase (EC 2.5.1.18) |
| SO1576 |
Gene: SO_1576: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Sputcn32_1306: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Sputw3181_2797: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Shewana3_2866: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Shewmr4_2696: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Shewmr7_2764: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Sbal_1393: Glutathione S-transferase (EC 2.5.1.18) |
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Gene: Sama_1087: Glutathione S-transferase (EC 2.5.1.18) |
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Gene: Ssed_3292: Glutathione S-transferase (EC 2.5.1.18) |
Gene: Swoo_3435: Glutathione S-transferase (EC 2.5.1.18) |
Glutathione S-transferase (EC 2.5.1.18) |
| CRON 2. | |||||||||||||||||
| SO1578 |
*
Shewanella oneidensis MR-1 Site: position = -112 score = 6.63263 sequence = TTAACGGAACGATCGGTTAG Gene: SO_1578: Transcriptional regulator, TetR family |
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*
Shewanella sp ANA-3 Site: position = -112 score = 6.63263 sequence = TTAACGGAACGATCGGTTAG Gene: Shewana3_2864: Transcriptional regulator, TetR family |
*
Shewanella sp MR-4 Site: position = -112 score = 6.63263 sequence = TTAACGGAACGATCGGTTAG Gene: Shewmr4_2694: Transcriptional regulator, TetR family |
*
Shewanella sp MR-7 Site: position = -111 score = 6.69948 sequence = TTAACGGAACGTTCGGTTAG Gene: Shewmr7_2762: Transcriptional regulator, TetR family |
*
Shewanella baltica OS155 Site: position = -122 score = 4.9936 sequence = ATATCTAAACGATCAGTCAA Site: position = -157 score = 6.63263 sequence = TTAACGGAACGATCGGTTAG Gene: Sbal_1395: Transcriptional regulator, TetR family |
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*
Shewanella amazonensis SB2B Site: position = -68 score = 5.47386 sequence = ATAACTGAACGAACGGTCAA Site: position = -103 score = 6.23463 sequence = TTATCTGAACGATCGGTTAG Gene: Sama_1089: Transcriptional regulator, TetR family |
*
Shewanella loihica PV-4 Site: position = -66 score = 6.10063 sequence = ATAACTGAACGTTCGGTCAA Site: position = -101 score = 5.60527 sequence = TTAACTGAACGCTCGTTTAG Gene: Shew_2729: Transcriptional regulator, TetR family |
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Shewanella woodyi ATCC 51908 Site: position = -90 score = 6.57122 sequence = TTAACTGAACGATCGGTTAG Site: position = -55 score = 4.99894 sequence = ATAGCTAAACGTTCGGTCAA Gene: Swoo_3433: Transcriptional regulator, TetR family |
Transcriptional regulator, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |