Regulog PdxR2 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - PdxR
By TF family - GntR/MocR
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222	3	1
Rhodobacter sphaeroides 2.4.1	2	1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
PF00117	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	* Paracoccus denitrificans PD1222 Site: position = -86 score = 14.1963 sequence = ACCGGCCTA-(14)-ACTGGCACT-(6)-TAGGCCAGT Gene: Pden_1435: Glutamine amidotransferase class-I	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Glutamine amidotransferase class-I
PF03473	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	2 Paracoccus denitrificans PD1222 Gene: Pden_1436: Molybdenum cofactor sulfurase, C-terminal Gene: Pden_4456: Molybdenum cofactor sulfurase, C-terminal	* Rhodobacter sphaeroides 2.4.1 Site: position = -165 score = 8.69192 sequence = TCCGGCCAC-(14)-TCGAGCACT-(6)-TGGGCCAGA Site: position = -385 score = 14.1963 sequence = ACCGGCCTA-(14)-ACTGGCACT-(6)-CAGGCCAGT Gene: RSP_1921: Molybdenum cofactor sulfurase, C-terminal	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Molybdenum cofactor sulfurase, C-terminal
pdxK	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	2 Paracoccus denitrificans PD1222 Gene: Pden_1437: Pyridoxal kinase (EC 2.7.1.35) Gene: Pden_4457: Pyridoxal kinase (EC 2.7.1.35)	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1920: Pyridoxal kinase (EC 2.7.1.35)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Pyridoxal kinase (EC 2.7.1.35)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR2 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --