Regulog PdxR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1	1	1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5	2	2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF00583	Azotobacter vinelandii AvOP	* Pseudomonas aeruginosa PAO1 Site: position = -133 score = 13.0204 sequence = AAATGGTCTG-(13)-AATTGGTGGG-(6)-CAAGCCATTA Gene: PA4166: acetyltransferase, GNAT family	Pseudomonas entomophila L48	* Pseudomonas fluorescens Pf-5 Site: position = -118 score = 9.38494 sequence = AAGTGGTCTG-(13)-AATTGGCCTG-(6)-TCCGCCACTC Gene: PFL_2438: acetyltransferase, GNAT family	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	acetyltransferase, GNAT family

CRON 2.
PF03594	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas fluorescens Pf-5 Site: position = -116 score = 10.1419 sequence = AAGTGGTCTG-(13)-ATGTGGCTCG-(6)-TAGTCCATCC Gene: PFL_0755: Putative pyridoxine transport protein	Pseudomonas mendocina ymp	Pseudomonas putida KT2440 Gene: PP2035: Putative pyridoxine transport protein	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Putative pyridoxine transport protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --