Regulog YdcR - Alcaligenaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Alcaligenaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50	6	2
Bordetella petrii DSM 12804

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes				Function

CRON 1.
cydA	Bordetella avium 197N	* Bordetella bronchiseptica RB50 Site: position = -129 score = 7.64224 sequence = AACTGATATGCTTTT-(15)-ATCTGTACTGATTTC Site: position = -124 score = 6.98489 sequence = ATATGCTTTTTTTAC-(10)-ATCTGTACTGATTTC Gene: BB1238: putative Cytochrome bd2, subunit I	Bordetella petrii DSM 12804	putative Cytochrome bd2, subunit I
cydB	Bordetella avium 197N	* Bordetella bronchiseptica RB50 Site: position = -162 score = 6.74088 sequence = CCCTGCTGCTGTTCG-(9)-ATCTGATCGTGTTCG Gene: BB1239: putative Cytochrome bd2, subunit II	Bordetella petrii DSM 12804	putative Cytochrome bd2, subunit II
PF10617	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB1240: cytochrome associated protein	Bordetella petrii DSM 12804	cytochrome associated protein
BB1241	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB1241: Transcriptional regulator, GntR family domain	Bordetella petrii DSM 12804	Transcriptional regulator, GntR family domain

CRON 2.
COG2863	Bordetella avium 197N	* Bordetella bronchiseptica RB50 Site: position = -123 score = 8.1014 sequence = ATCTGCTATGGTCTC-(9)-ATCTGCGCCTGTCCC Gene: BB4510: Probable cytochrome c2	Bordetella petrii DSM 12804 Gene: Bpet0444: Probable cytochrome c2	Probable cytochrome c2
COG3258	Bordetella avium 197N	Bordetella bronchiseptica RB50 Gene: BB4509: Putative diheme cytochrome c-553	Bordetella petrii DSM 12804 Gene: Bpet0445: Putative diheme cytochrome c-553	Putative diheme cytochrome c-553

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Alcaligenaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --