Regulog YdcR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | ||
| Bordetella bronchiseptica RB50 | 6 | 2 |
| Bordetella petrii DSM 12804 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| cydA |
|
*
Bordetella bronchiseptica RB50 Site: position = -129 score = 7.64224 sequence = AACTGATATGCTTTT-(15)-ATCTGTACTGATTTC Site: position = -124 score = 6.98489 sequence = ATATGCTTTTTTTAC-(10)-ATCTGTACTGATTTC Gene: BB1238: putative Cytochrome bd2, subunit I |
|
putative Cytochrome bd2, subunit I |
| cydB |
|
*
Bordetella bronchiseptica RB50 Site: position = -162 score = 6.74088 sequence = CCCTGCTGCTGTTCG-(9)-ATCTGATCGTGTTCG Gene: BB1239: putative Cytochrome bd2, subunit II |
|
putative Cytochrome bd2, subunit II |
| PF10617 |
|
Gene: BB1240: cytochrome associated protein |
|
cytochrome associated protein |
| BB1241 |
|
Gene: BB1241: Transcriptional regulator, GntR family domain |
|
Transcriptional regulator, GntR family domain |
| CRON 2. | ||||
| COG2863 |
|
*
Bordetella bronchiseptica RB50 Site: position = -123 score = 8.1014 sequence = ATCTGCTATGGTCTC-(9)-ATCTGCGCCTGTCCC Gene: BB4510: Probable cytochrome c2 |
Gene: Bpet0444: Probable cytochrome c2 |
Probable cytochrome c2 |
| COG3258 |
|
Gene: BB4509: Putative diheme cytochrome c-553 |
Gene: Bpet0445: Putative diheme cytochrome c-553 |
Putative diheme cytochrome c-553 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |