Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdcR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50 6 2
Bordetella petrii DSM 12804
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cydA
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -129
score = 7.64224
sequence = AACTGATATGCTTTT-(15)-ATCTGTACTGATTTC

Site:
position = -124
score = 6.98489
sequence = ATATGCTTTTTTTAC-(10)-ATCTGTACTGATTTC

Gene: BB1238: putative Cytochrome bd2, subunit I
 
Bordetella petrii DSM 12804
putative Cytochrome bd2, subunit I
cydB
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -162
score = 6.74088
sequence = CCCTGCTGCTGTTCG-(9)-ATCTGATCGTGTTCG

Gene: BB1239: putative Cytochrome bd2, subunit II
 
Bordetella petrii DSM 12804
putative Cytochrome bd2, subunit II
PF10617
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB1240: cytochrome associated protein
 
Bordetella petrii DSM 12804
cytochrome associated protein
BB1241
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB1241: Transcriptional regulator, GntR family domain
 
Bordetella petrii DSM 12804
Transcriptional regulator, GntR family domain
 
CRON 2.
COG2863
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -123
score = 8.1014
sequence = ATCTGCTATGGTCTC-(9)-ATCTGCGCCTGTCCC

Gene: BB4510: Probable cytochrome c2
 
Bordetella petrii DSM 12804

Gene: Bpet0444: Probable cytochrome c2
Probable cytochrome c2
COG3258
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB4509: Putative diheme cytochrome c-553
 
Bordetella petrii DSM 12804

Gene: Bpet0445: Putative diheme cytochrome c-553
Putative diheme cytochrome c-553
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD