Regulog NmlR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | activator |
| Biological process: | Carbonyl stress response |
| Effector: | Diamide |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NmlR
- By TF family - MerR
- By effector - Diamide
- By pathway - Carbonyl stress response
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 1 | 1 |
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| pcaC |
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Shewanella oneidensis MR-1 Site: position = -60 score = 6.81782 sequence = CTTAGAGCTAACTCTAAG Gene: SO_0083: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Shewanella sp MR-4 Site: position = -57 score = 6.81782 sequence = CTTAGAGTGAACTCTAAG Gene: Shewmr4_0089: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Shewanella baltica OS155 Site: position = -58 score = 7.12785 sequence = CTTAGAGTTAACTCTAAG Gene: Sbal_4266: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Shewanella frigidimarina NCIMB 400 Site: position = -58 score = 6.81782 sequence = CTTAGAGTTAACTCTAAC Gene: Sfri_3873: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Shewanella woodyi ATCC 51908 Site: position = -57 score = 7.12785 sequence = CTTAGAGTTAACTCTAAG Gene: Swoo_4049: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |