Regulog PdxR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - PdxR
By TF family - GntR/MocR
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1	1	1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009	4	2
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
glyA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	* Rhodopseudomonas palustris CGA009 Site: position = -128 score = 10.4525 sequence = AATTGGTTGG-(13)-AAGTGGAAGG-(6)-CAGACCACGC Gene: RPA2796: Serine hydroxymethyltransferase (EC 2.1.2.1)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Serine hydroxymethyltransferase (EC 2.1.2.1)
PF01168	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2795: PLP-binding protein involved in PLP homeostasis	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	PLP-binding protein involved in PLP homeostasis

CRON 2.
PF03594	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	* Rhodopseudomonas palustris CGA009 Site: position = -58 score = 13.4421 sequence = AAATGGTCTG-(13)-TAATGGAGGG-(6)-CAGGCCACCG Gene: RPA2798: Putative pyridoxine transport protein	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putative pyridoxine transport protein
pdxK	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr4233: Pyridoxal kinase (EC 2.7.1.35)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2799: Pyridoxal kinase (EC 2.7.1.35)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Pyridoxal kinase (EC 2.7.1.35)

CRON 3.
PdxR	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	* Mesorhizobium sp. BNC1 Site: position = -70 score = 8.27576 sequence = ACATGCCTTG-(13)-CAATGGCCTG-(6)-CCTGCCAATT Gene: Meso_4362: Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2797: Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --