Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxR - Various betaproteobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T 5 1
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Thiobacillus denitrificans
Nitrosospira multiformis ATCC 25196
Nitrosomonas europaea ATCC 19718
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181
Methylobacillus flagellatus KT
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF03594
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
*
Thauera sp. MZ1T

Site:
position = -113
score = 13.5615
sequence = AATTGGCCGG-(13)-AAGTGGTGGG-(6)-CGGGCCATTT

Gene: Tmz1t_0985: Putative pyridoxine transport protein
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
Putative pyridoxine transport protein
PF01168
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T

Gene: Tmz1t_0984: PLP-binding protein involved in PLP homeostasis
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
PLP-binding protein involved in PLP homeostasis
PF00117
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T

Gene: Tmz1t_0983: Glutamine amidotransferase type 1
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
Glutamine amidotransferase type 1
PF00202
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T

Gene: Tmz1t_0982: Pyridoxal phosphate-dependent transferase
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
Pyridoxal phosphate-dependent transferase
glyA
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
 
Thauera sp. MZ1T

Gene: Tmz1t_0981: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Thiobacillus denitrificans
 
Nitrosospira multiformis ATCC 25196
 
Nitrosomonas europaea ATCC 19718
 
Methylotenera mobilis JLW8
 
Methylophilales bacterium HTCC2181
 
Methylobacillus flagellatus KT
Serine hydroxymethyltransferase (EC 2.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD