Regulog PdxR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Various betaproteobacteria
By trascription factor - PdxR
By TF family - GntR/MocR
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T	5	1
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Thiobacillus denitrificans
Nitrosospira multiformis ATCC 25196
Nitrosomonas europaea ATCC 19718
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181
Methylobacillus flagellatus KT

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
PF03594	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	* Thauera sp. MZ1T Site: position = -113 score = 13.5615 sequence = AATTGGCCGG-(13)-AAGTGGTGGG-(6)-CGGGCCATTT Gene: Tmz1t_0985: Putative pyridoxine transport protein	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Putative pyridoxine transport protein
PF01168	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0984: PLP-binding protein involved in PLP homeostasis	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	PLP-binding protein involved in PLP homeostasis
PF00117	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0983: Glutamine amidotransferase type 1	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Glutamine amidotransferase type 1
PF00202	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0982: Pyridoxal phosphate-dependent transferase	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Pyridoxal phosphate-dependent transferase
glyA	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0981: Serine hydroxymethyltransferase (EC 2.1.2.1)	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Thiobacillus denitrificans	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylobacillus flagellatus KT	Serine hydroxymethyltransferase (EC 2.1.2.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --