Regulog PdxR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 2 | 1 |
| Delftia acidovorans SPH-1 | 4 | 1 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| PF03594 |
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Comamonas testosteroni KF-1 Site: position = -109 score = 13.9154 sequence = AATTGGTCTG-(13)-AAGTGGCGGG-(6)-CAGTCCATTT Gene: CtesDRAFT_4061: Putative pyridoxine transport protein |
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Delftia acidovorans SPH-1 Site: position = -114 score = 12.1806 sequence = AAGTGGTCTG-(13)-AAGTGTATGG-(6)-CAGTCCACTT Gene: Daci_3710: Putative pyridoxine transport protein |
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Putative pyridoxine transport protein |
| PF01168 |
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Gene: CtesDRAFT_4062: PLP-binding protein involved in PLP homeostasis |
Gene: Daci_3709: PLP-binding protein involved in PLP homeostasis |
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PLP-binding protein involved in PLP homeostasis |
| PF00202 |
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Gene: CtesDRAFT_4063: Pyridoxal phosphate-dependent transferase |
Gene: Daci_3708: Pyridoxal phosphate-dependent transferase |
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Pyridoxal phosphate-dependent transferase |
| glyA |
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Gene: Daci_3707: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Serine hydroxymethyltransferase (EC 2.1.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |