Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxR - Staphylococcaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: activator
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Macrococcus caseolyticus JCSC5402 2 1
Staphylococcus aureus subsp. aureus N315 2 1
Staphylococcus capitis SK14 2 1
Staphylococcus carnosus subsp. carnosus TM300 2 1
Staphylococcus epidermidis ATCC 12228 2 1
Staphylococcus haemolyticus JCSC1435 2 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxS
*
Macrococcus caseolyticus JCSC5402

Site:
position = -101
score = 11.5591
sequence = ACTGACCC-(16)-ACTGATAC-(7)-ATATCAGA

Gene: MCCL_1893: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -96
score = 10.4712
sequence = ACTGACCT-(16)-TTTGTACC-(7)-ATATCAGT

Gene: SA0477: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus capitis SK14

Site:
position = -92
score = 11.4089
sequence = TCTGACCC-(16)-ATTGAACC-(7)-ATATCAGT

Gene: STACA0001_0516: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -93
score = 10.9972
sequence = ACTGACCT-(16)-ATTGACTC-(7)-CTATCAGT

Gene: Sca_0173: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -93
score = 11.2706
sequence = ACTGACCC-(16)-ATTGAACC-(7)-ATATCAGT

Gene: SE2262: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -93
score = 10.719
sequence = ACTGACCC-(16)-ATTGTACC-(7)-ATATCAGT

Gene: SH2490: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -96
score = 10.4433
sequence = TCTGACCC-(16)-ATTGTACC-(7)-ATACCAGT

Gene: SSP2237: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1892: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus aureus subsp. aureus N315

Gene: SA0478: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus capitis SK14

Gene: STACA0001_0515: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_0174: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE2261: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH2489: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP2236: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise