Regulog PdxR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16	2	1
Bacillus halodurans C-125
Bacillus licheniformis DSM 13
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	2	1
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
pdxS	Anoxybacillus flavithermus WK1 Gene: Aflv_0011: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_000140: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus cereus ATCC 14579 Gene: BC0015: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Bacillus clausii KSM-K16 Site: position = -104 score = 11.6133 sequence = TCTGACCT-(16)-ACTGACAC-(8)-TGGTCAGT Gene: ABC0451: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus halodurans C-125 Gene: BH0022: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus licheniformis DSM 13 Gene: BLi00016: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus pumilus SAFR-032 Gene: BPUM_0507: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU00110: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Geobacillus kaustophilus HTA426 Gene: GK0011: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Oceanobacillus iheyensis HTE831 Site: position = -103 score = 11.7989 sequence = ACTGACCT-(16)-ATTGGCAC-(8)-ATATCAAT Gene: OB2687: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Paenibacillus sp. JDR-2 Gene: Pjdr2_0091: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT	Anoxybacillus flavithermus WK1 Gene: Aflv_0012: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_000150: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus cereus ATCC 14579 Gene: BC0016: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus clausii KSM-K16 Gene: ABC0452: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus halodurans C-125 Gene: BH0023: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus licheniformis DSM 13 Gene: BLi00017: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus pumilus SAFR-032 Gene: BPUM_0508: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU00120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Geobacillus kaustophilus HTA426 Gene: GK0012: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Oceanobacillus iheyensis HTE831 Gene: OB2686: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Paenibacillus sp. JDR-2 Gene: Pjdr2_0092: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --