Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MdeR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator (repressor)
Biological process: Methionine metabolism
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alteromonas macleodii 'Deep ecotype'
Alteromonadales bacterium TW-7
Colwellia psychrerythraea 34H 2 2
Glaciecola sp. HTCC2999
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
mdeR
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7
*
Colwellia psychrerythraea 34H

Site:
position = -153
score = 6.07555
sequence = TTGTACTAAAATAATTACAA

Site:
position = -62
score = 5.69203
sequence = TTGTACTAATTTTATTACTG

Site:
position = -43
score = 4.58736
sequence = GTGTAATATTTGTAGTACAC

Gene: CPS_1706: Methionine degradation transcriptional activator, TyrR family
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
 
Pseudoalteromonas atlantica T6c
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
Methionine degradation transcriptional activator, TyrR family
 
CRON 2.
mdeA
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7

Gene: ATW7_09361: Methionine gamma-lyase (EC 4.4.1.11)
*
Colwellia psychrerythraea 34H

Site:
position = -277
score = 6.07555
sequence = TTGTAATTATTTTAGTACAA

Gene: CPS_1705: Methionine gamma-lyase (EC 4.4.1.11)
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145

Gene: OS145_07157: Methionine gamma-lyase (EC 4.4.1.11)
 
Idiomarina loihiensis L2TR

Gene: IL0726: Methionine gamma-lyase (EC 4.4.1.11)
 
Pseudoalteromonas atlantica T6c
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2044: Methionine gamma-lyase (EC 4.4.1.11)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_15972: Methionine gamma-lyase (EC 4.4.1.11)
Methionine gamma-lyase (EC 4.4.1.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD