Regulog MdeR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TyrR
Regulation mode:	activator (repressor)
Biological process:	Methionine metabolism
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Alteromonas macleodii 'Deep ecotype'
Alteromonadales bacterium TW-7
Colwellia psychrerythraea 34H	2	2
Glaciecola sp. HTCC2999
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
mdeR	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7	* Colwellia psychrerythraea 34H Site: position = -153 score = 6.07555 sequence = TTGTACTAAAATAATTACAA Site: position = -62 score = 5.69203 sequence = TTGTACTAATTTTATTACTG Site: position = -43 score = 4.58736 sequence = GTGTAATATTTGTAGTACAC Gene: CPS_1706: Methionine degradation transcriptional activator, TyrR family	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Methionine degradation transcriptional activator, TyrR family

CRON 2.
mdeA	Alteromonas macleodii 'Deep ecotype'	Alteromonadales bacterium TW-7 Gene: ATW7_09361: Methionine gamma-lyase (EC 4.4.1.11)	* Colwellia psychrerythraea 34H Site: position = -277 score = 6.07555 sequence = TTGTAATTATTTTAGTACAA Gene: CPS_1705: Methionine gamma-lyase (EC 4.4.1.11)	Glaciecola sp. HTCC2999	Idiomarina baltica OS145 Gene: OS145_07157: Methionine gamma-lyase (EC 4.4.1.11)	Idiomarina loihiensis L2TR Gene: IL0726: Methionine gamma-lyase (EC 4.4.1.11)	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2044: Methionine gamma-lyase (EC 4.4.1.11)	Pseudoalteromonas tunicata D2 Gene: PTD2_15972: Methionine gamma-lyase (EC 4.4.1.11)	Methionine gamma-lyase (EC 4.4.1.11)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --