Regulog Nfa21130 - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 1 | 1 |
| Rhodococcus erythropolis PR4 | 1 | 1 |
| Rhodococcus opacus B4 | 1 | 1 |
| Rhodococcus sp. RHA1 | 1 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pcaC |
*
Nocardia farcinica IFM 10152 Site: position = -69 score = 9.33644 sequence = GAAATGGCCCAT-(12)-GGAATGGACCAT Gene: nfa21120: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*
Rhodococcus erythropolis PR4 Site: position = -69 score = 9.0909 sequence = AGATTGGCCCAT-(12)-GGATTGAACCAT Gene: RER_05320: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*
Rhodococcus opacus B4 Site: position = -69 score = 9.23 sequence = GAATTGGCCCAA-(12)-GAATTGAACCAC Gene: ROP_51340: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*
Rhodococcus sp. RHA1 Site: position = -27 score = 9.51894 sequence = GAATTGGCCCAA-(12)-GAATTGAACCAT Gene: RHA1_ro05073: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |