Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Nfa21130 - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152 1 1
Rhodococcus erythropolis PR4 1 1
Rhodococcus opacus B4 1 1
Rhodococcus sp. RHA1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pcaC
*
Nocardia farcinica IFM 10152

Site:
position = -69
score = 9.33644
sequence = GAAATGGCCCAT-(12)-GGAATGGACCAT

Gene: nfa21120: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Rhodococcus erythropolis PR4

Site:
position = -69
score = 9.0909
sequence = AGATTGGCCCAT-(12)-GGATTGAACCAT

Gene: RER_05320: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Rhodococcus opacus B4

Site:
position = -69
score = 9.23
sequence = GAATTGGCCCAA-(12)-GAATTGAACCAC

Gene: ROP_51340: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
*
Rhodococcus sp. RHA1

Site:
position = -27
score = 9.51894
sequence = GAATTGGCCCAA-(12)-GAATTGAACCAT

Gene: RHA1_ro05073: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD