Regulog SCO4836 - Streptomycetaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces avermitilis MA-4680 | 3 | 3 |
| Streptomyces coelicolor A3(2) | 3 | 2 |
| Streptomyces griseus subsp. griseus NBRC 13350 | 3 | 3 |
| Streptomyces scabiei 87.22 | 1 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pcaC |
*
Streptomyces avermitilis MA-4680 Site: position = -64 score = 9.03729 sequence = GAATTGACCCAT-(12)-GAAATGAACCAT Gene: SAV_6257: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
|
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -70 score = 8.55717 sequence = GAATTGACCCAT-(12)-GAAATGCACCCC Gene: SGR_5307: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*
Streptomyces scabiei 87.22 Site: position = -70 score = 8.55717 sequence = GAATTGACCCAC-(12)-GAAATGCACCCT Site: position = -94 score = 7.08245 sequence = AGATCGGCCCCG-(12)-GAATTGACCCAC Gene: SCAB_69301: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
| CRON 2. | |||||
| PF00892 |
*
Streptomyces avermitilis MA-4680 Site: position = -70 score = 8.30717 sequence = GCATTGGTCCCC-(12)-GAAGTGGACCTT Gene: SAV_7066: Permeases of the drug/metabolite transporter (DMT) superfamily |
*
Streptomyces coelicolor A3(2) Site: position = -70 score = 8.14406 sequence = GGATTGGTCCCC-(12)-GAAGTGGACCCC Gene: SCO7394: Permeases of the drug/metabolite transporter (DMT) superfamily |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -70 score = 8.30717 sequence = GCATTGGTCCCC-(12)-GAAGTGGACCTT Gene: SGR_6262: Permeases of the drug/metabolite transporter (DMT) superfamily |
|
Permeases of the drug/metabolite transporter (DMT) superfamily |
| CRON 3. | |||||
| pcaC2 |
*
Streptomyces avermitilis MA-4680 Site: position = -70 score = 8.58309 sequence = AAAGTGGCCCAA-(12)-TAAATGGACCAT Gene: SAV_3428: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*2
Streptomyces coelicolor A3(2) Site: position = -70 score = 8.68102 sequence = AGAGTGGCCCAG-(12)-GAAATGGACCAT Gene: SCO4835: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein Gene: SCO4834: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -70 score = 8.31964 sequence = AAAGTGGCCCAG-(12)-CCAATGGACCAT Gene: SGR_2707: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
|
4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |