Regulog PdxR2 - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Nakamurella multipartita DSM 44233 | 1 | 1 |
| Frankia sp. EAN1pec | ||
| Frankia sp. CcI3 | ||
| Acidothermus cellulolyticus 11B | ||
| Nocardioides sp. JS614 | 1 | 1 |
| Propionibacterium acnes KPA171202 | ||
| Actinosynnema mirum DSM 43827 | 2 | 2 |
| Saccharomonospora viridis DSM 43017 | 1 | 1 |
| Saccharopolyspora erythraea NRRL 2338 | 2 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| pdxS |
Gene: Namu_3415: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Franean1_5149: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Francci3_1366: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Acel_1348: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Noca_2381: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Actinosynnema mirum DSM 43827 Site: position = -104 score = 11.4038 sequence = AGTGGACTGC-(14)-ATTGGCTCCT-(4)-GCGGGCCACG Gene: Amir_2108: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Saccharomonospora viridis DSM 43017 Site: position = -105 score = 13.0006 sequence = AGTGGCCTGC-(14)-AATGGCCCTT-(3)-GCAGGCCACG Gene: Svir_14990: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: SACE_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| CRON 2. | ||||||||||
| pdxO |
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Nakamurella multipartita DSM 44233 Site: position = -59 score = 13.6883 sequence = AGTGGCCTTT-(14)-AGTGGCCCTC-(3)-GGATGCCACT Gene: Namu_0647: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Nocardioides sp. JS614 Site: position = -67 score = 12.7326 sequence = ATTGTCCTGT-(14)-ATTGGCCCGT-(4)-GCAGGCCACT Gene: Noca_3467: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Actinosynnema mirum DSM 43827 Site: position = -68 score = 13.7146 sequence = AGTGGCATCC-(14)-ATTGGCACTT-(4)-GGGTGCCACT Gene: Amir_5990: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -156 score = 13.3306 sequence = TGTGGCATTT-(14)-ATTGGCACTT-(3)-TAATGCCACT Gene: SACE_6132: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
| CRON 3. | ||||||||||
| PF00701 |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -107 score = 12.8888 sequence = AGTGGCCCTT-(14)-ATTGGCCCTT-(3)-CGATGCCACT Gene: SACE_1253: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Dihydrodipicolinate synthase (EC 4.2.1.52) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |