Regulog RhaS - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By TF family - AraC
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | ||
| Aeromonas salmonicida subsp. salmonicida A449 | ||
| Tolumonas auensis DSM 9187 | 8 | 4 |
| Psychromonas sp. CNPT3 | ||
| Psychromonas ingrahamii 37 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| rhaD |
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*
Tolumonas auensis DSM 9187 Site: position = -158 score = 9.03159 sequence = TCCTTGGAAATACTGCCA-(15)-TGGCCAATAGCTGAAGGT Gene: Tola_1034: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
|
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
| CRON 2. | ||||||
| rhaB |
|
|
*
Tolumonas auensis DSM 9187 Site: position = -106 score = 9.09434 sequence = TTCTTGGTTTTTATGCCA-(15)-TGGCATAGGAAAAAAGGT Gene: Tola_1043: Rhamnulokinase (EC 2.7.1.5) |
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Rhamnulokinase (EC 2.7.1.5) |
| rhaA |
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Gene: Tola_1042: L-rhamnose isomerase (EC 5.3.1.14) |
|
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L-rhamnose isomerase (EC 5.3.1.14) |
| rhaT |
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Gene: Tola_1041: L-rhamnose:proton symporter |
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L-rhamnose:proton symporter |
| rhaM |
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Gene: Tola_1040: L-rhamnose mutarotase |
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L-rhamnose mutarotase |
| CRON 3. | ||||||
| rhaZ |
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|
*
Tolumonas auensis DSM 9187 Site: position = -111 score = 7.42449 sequence = TTCTTGAGAAAAATGCCA-(15)-TGGCAGATTAATTAAGGT Gene: Tola_1045: L-lactaldehyde reductase |
|
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L-lactaldehyde reductase |
| CRON 4. | ||||||
| Tola_1038 |
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*
Tolumonas auensis DSM 9187 Site: position = -154 score = 7.46914 sequence = ATCTCCCTGAAAACGCCA-(15)-TGGCATAGAGACGAAAGT Gene: Tola_1038: Putative rhamnoside transporter |
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Putative rhamnoside transporter |
| rhmA |
|
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Gene: Tola_1037: alpha-L-rhamnosidase |
|
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alpha-L-rhamnosidase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |