Regulog RhaS - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By TF family - AraC
By effector - Rhamnose
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Tolumonas auensis DSM 9187	8	4
Psychromonas sp. CNPT3
Psychromonas ingrahamii 37

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
rhaD	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -158 score = 9.03159 sequence = TCCTTGGAAATACTGCCA-(15)-TGGCCAATAGCTGAAGGT Gene: Tola_1034: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)

CRON 2.
rhaB	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -106 score = 9.09434 sequence = TTCTTGGTTTTTATGCCA-(15)-TGGCATAGGAAAAAAGGT Gene: Tola_1043: Rhamnulokinase (EC 2.7.1.5)	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	Rhamnulokinase (EC 2.7.1.5)
rhaA	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_1042: L-rhamnose isomerase (EC 5.3.1.14)	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	L-rhamnose isomerase (EC 5.3.1.14)
rhaT	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_1041: L-rhamnose:proton symporter	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	L-rhamnose:proton symporter
rhaM	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_1040: L-rhamnose mutarotase	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	L-rhamnose mutarotase

CRON 3.
rhaZ	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -111 score = 7.42449 sequence = TTCTTGAGAAAAATGCCA-(15)-TGGCAGATTAATTAAGGT Gene: Tola_1045: L-lactaldehyde reductase	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	L-lactaldehyde reductase

CRON 4.
Tola_1038	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -154 score = 7.46914 sequence = ATCTCCCTGAAAACGCCA-(15)-TGGCATAGAGACGAAAGT Gene: Tola_1038: Putative rhamnoside transporter	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	Putative rhamnoside transporter
rhmA	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_1037: alpha-L-rhamnosidase	Psychromonas sp. CNPT3	Psychromonas ingrahamii 37	alpha-L-rhamnosidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaS - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --