Regulog GabR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1	2	1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2	7	1
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236	7	1
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
puuD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1740: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)	Methylibium petroleiphilum PM1 Gene: Mpe_A1900: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)	* Polaromonas naphthalenivorans CJ2 Site: position = -153 score = 12.7774 sequence = AGTGGCAC-(15)-AATGGCAC-(7)-GACCCAAT Gene: Pnap_2865: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -84 score = 12.4388 sequence = AGTGGCAC-(15)-ACCGGCCC-(7)-GAACCAAT Gene: Rfer_0349: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
puuA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1739: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Methylibium petroleiphilum PM1 Gene: Mpe_A1901: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2864: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0350: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0825: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
gatP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1738: Gamma-aminobutyrate transaminase (EC 2.6.1.96)	Methylibium petroleiphilum PM1 Gene: Mpe_A1902: Gamma-aminobutyrate transaminase (EC 2.6.1.96)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2863: Gamma-aminobutyrate transaminase (EC 2.6.1.96)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0351: Gamma-aminobutyrate transaminase (EC 2.6.1.96)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0824: Gamma-aminobutyrate transaminase (EC 2.6.1.96)	Gamma-aminobutyrate transaminase (EC 2.6.1.96)
puuO	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1736: Predicted putrescine ABC transporter, periplasmic binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A1903: Predicted putrescine ABC transporter, periplasmic binding protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2862: Predicted putrescine ABC transporter, periplasmic binding protein	Polaromonas sp. JS666 Gene: Bpro_2095: Predicted putrescine ABC transporter, periplasmic binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0352: Predicted putrescine ABC transporter, periplasmic binding protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1698: Predicted putrescine ABC transporter, periplasmic binding protein	Predicted putrescine ABC transporter, periplasmic binding protein
puuL	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1735: Predicted putrescine ABC transporter, ATP-binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A1904: Predicted putrescine ABC transporter, ATP-binding protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2861: Predicted putrescine ABC transporter, ATP-binding protein	Polaromonas sp. JS666 Gene: Bpro_2096: Predicted putrescine ABC transporter, ATP-binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0353: Predicted putrescine ABC transporter, ATP-binding protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0823: Predicted putrescine ABC transporter, ATP-binding protein	Predicted putrescine ABC transporter, ATP-binding protein
puuM	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1734: Predicted putrescine ABC transporter, permease component	Methylibium petroleiphilum PM1 Gene: Mpe_A1905: Predicted putrescine ABC transporter, permease component	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2860: Predicted putrescine ABC transporter, permease component	Polaromonas sp. JS666 Gene: Bpro_2097: Predicted putrescine ABC transporter, permease component	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0354: Predicted putrescine ABC transporter, permease component	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0822: Predicted putrescine ABC transporter, permease component	Predicted putrescine ABC transporter, permease component
puuN	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1733: Predicted putrescine ABC transporter, permease component	Methylibium petroleiphilum PM1 Gene: Mpe_A1906: Predicted putrescine ABC transporter, permease component	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2859: Predicted putrescine ABC transporter, permease component	Polaromonas sp. JS666 Gene: Bpro_2098: Predicted putrescine ABC transporter, permease component	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0355: Predicted putrescine ABC transporter, permease component	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0821: Predicted putrescine ABC transporter, permease component	Predicted putrescine ABC transporter, permease component

CRON 2.
gabT	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -97 score = 12.836 sequence = ATTGGCAC-(16)-GATGGCTC-(8)-GAACCAAT Gene: Daci_5049: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5050: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --