Regulog GabR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 2 | 1 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | 7 | 1 |
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | 7 | 1 |
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| puuD |
|
|
|
|
Gene: Lcho_1740: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) |
Gene: Mpe_A1900: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) |
*
Polaromonas naphthalenivorans CJ2 Site: position = -153 score = 12.7774 sequence = AGTGGCAC-(15)-AATGGCAC-(7)-GACCCAAT Gene: Pnap_2865: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) |
|
*
Rhodoferax ferrireducens DSM 15236 Site: position = -84 score = 12.4388 sequence = AGTGGCAC-(15)-ACCGGCCC-(7)-GAACCAAT Gene: Rfer_0349: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) |
|
|
Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) |
| puuA |
|
|
|
|
Gene: Lcho_1739: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
Gene: Mpe_A1901: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
Gene: Pnap_2864: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
|
Gene: Rfer_0350: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
|
Gene: Veis_0825: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) |
| gatP |
|
|
|
|
Gene: Lcho_1738: Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
Gene: Mpe_A1902: Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
Gene: Pnap_2863: Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
|
Gene: Rfer_0351: Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
|
Gene: Veis_0824: Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
Gamma-aminobutyrate transaminase (EC 2.6.1.96) |
| puuO |
|
|
|
|
Gene: Lcho_1736: Predicted putrescine ABC transporter, periplasmic binding protein |
Gene: Mpe_A1903: Predicted putrescine ABC transporter, periplasmic binding protein |
Gene: Pnap_2862: Predicted putrescine ABC transporter, periplasmic binding protein |
Gene: Bpro_2095: Predicted putrescine ABC transporter, periplasmic binding protein |
Gene: Rfer_0352: Predicted putrescine ABC transporter, periplasmic binding protein |
|
Gene: Veis_1698: Predicted putrescine ABC transporter, periplasmic binding protein |
Predicted putrescine ABC transporter, periplasmic binding protein |
| puuL |
|
|
|
|
Gene: Lcho_1735: Predicted putrescine ABC transporter, ATP-binding protein |
Gene: Mpe_A1904: Predicted putrescine ABC transporter, ATP-binding protein |
Gene: Pnap_2861: Predicted putrescine ABC transporter, ATP-binding protein |
Gene: Bpro_2096: Predicted putrescine ABC transporter, ATP-binding protein |
Gene: Rfer_0353: Predicted putrescine ABC transporter, ATP-binding protein |
|
Gene: Veis_0823: Predicted putrescine ABC transporter, ATP-binding protein |
Predicted putrescine ABC transporter, ATP-binding protein |
| puuM |
|
|
|
|
Gene: Lcho_1734: Predicted putrescine ABC transporter, permease component |
Gene: Mpe_A1905: Predicted putrescine ABC transporter, permease component |
Gene: Pnap_2860: Predicted putrescine ABC transporter, permease component |
Gene: Bpro_2097: Predicted putrescine ABC transporter, permease component |
Gene: Rfer_0354: Predicted putrescine ABC transporter, permease component |
|
Gene: Veis_0822: Predicted putrescine ABC transporter, permease component |
Predicted putrescine ABC transporter, permease component |
| puuN |
|
|
|
|
Gene: Lcho_1733: Predicted putrescine ABC transporter, permease component |
Gene: Mpe_A1906: Predicted putrescine ABC transporter, permease component |
Gene: Pnap_2859: Predicted putrescine ABC transporter, permease component |
Gene: Bpro_2098: Predicted putrescine ABC transporter, permease component |
Gene: Rfer_0355: Predicted putrescine ABC transporter, permease component |
|
Gene: Veis_0821: Predicted putrescine ABC transporter, permease component |
Predicted putrescine ABC transporter, permease component |
| CRON 2. | ||||||||||||
| gabT |
|
|
|
*
Delftia acidovorans SPH-1 Site: position = -97 score = 12.836 sequence = ATTGGCAC-(16)-GATGGCTC-(8)-GAACCAAT Gene: Daci_5049: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
|
|
|
|
|
|
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabD |
|
|
|
Gene: Daci_5050: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
|
|
|
|
|
|
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |