Regulog YdcR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Citrobacter koseri ATCC BAA-895	1	1
Edwardsiella tarda EIB202
Enterobacter sp. 638	3	2
Erwinia amylovora ATCC 49946	1	1
Erwinia carotovora subsp. atroseptica SCRI1043	1	1
Escherichia coli str. K-12 substr. MG1655	1	1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	3	2
Photorhabdus luminescens subsp. laumondii TTO1	2	1
Proteus mirabilis HI4320	2	1
Salmonella typhimurium LT2	1	1
Serratia proteamaculans 568	3	2
Yersinia pestis KIM

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
PF10777	* Citrobacter koseri ATCC BAA-895 Site: position = -76 score = 8.52024 sequence = AACTGTTATGATAAA-(9)-ATCTGTTACTTTTTT Gene: CKO_02694: Extracytoplasmic function sigma factor YlaC	Edwardsiella tarda EIB202	* Enterobacter sp. 638 Site: position = -104 score = 8.76846 sequence = AACTGTTATGCTTTT-(9)-AACTGTTACTTTTTT Gene: Ent638_0938: Extracytoplasmic function sigma factor YlaC	* Erwinia amylovora ATCC 49946 Site: position = -97 score = 7.90452 sequence = CACTGTTATAGCTTA-(9)-AACTGTGTCTGCTGT Gene: EAM_2946: Extracytoplasmic function sigma factor YlaC	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -121 score = 8.87487 sequence = AACTGTTATAGCCAA-(9)-AACTGTATCTGTTAT Gene: ECA3006: Extracytoplasmic function sigma factor YlaC	* Escherichia coli str. K-12 substr. MG1655 Site: position = -103 score = 6.80413 sequence = AACTGTTATGCAAAA-(9)-ATCTGTTACTTCCCC Gene: b0458: Extracytoplasmic function sigma factor YlaC	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -134 score = 8.22731 sequence = AACTGTTATGCTTTT-(9)-ATCTGTTACTTTCTC Gene: KPN_00439: Extracytoplasmic function sigma factor YlaC	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu1841: Extracytoplasmic function sigma factor YlaC	Proteus mirabilis HI4320 Gene: PMI1677: Extracytoplasmic function sigma factor YlaC	* Salmonella typhimurium LT2 Site: position = -106 score = 8.53802 sequence = AACTGTTATGCTAAT-(9)-ATCTGTTACTTTTTT Gene: STM0471: Extracytoplasmic function sigma factor YlaC	* Serratia proteamaculans 568 Site: position = -53 score = 6.11864 sequence = AACTGATCTACCTGC-(9)-ACTTGTGTTAGTTTG Gene: Spro_1865: Extracytoplasmic function sigma factor YlaC	Yersinia pestis KIM Gene: y1815: Extracytoplasmic function sigma factor YlaC	Extracytoplasmic function sigma factor YlaC

CRON 2.
PF01654	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	* Enterobacter sp. 638 Site: position = -93 score = 7.7037 sequence = AACTGTTATACCTAA-(9)-TTCTGACTCTGATAG Gene: Ent638_2131: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -94 score = 6.46992 sequence = AACTGTTATGATAAA-(9)-GACTGCCTCTGCCCC Gene: KPN_01930: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -112 score = 9.00093 sequence = AACTGTTATAGTCAA-(9)-AACTGTCACTATTAT Gene: plu2043: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	* Proteus mirabilis HI4320 Site: position = -129 score = 7.93364 sequence = AACTGTTATAGTCGT-(9)-TATTGTCACTATTAT Gene: PMI1434: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Salmonella typhimurium LT2	* Serratia proteamaculans 568 Site: position = -137 score = 7.96074 sequence = AACTGTTATATGAAA-(9)-AACTGTCACTATTAT Gene: Spro_2859: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Yersinia pestis KIM	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
PF02322	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638 Gene: Ent638_2132: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01931: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu2042: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Proteus mirabilis HI4320 Gene: PMI1435: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_2860: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Yersinia pestis KIM	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --