Regulog YdcR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 1 | 1 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | 3 | 2 |
| Erwinia amylovora ATCC 49946 | 1 | 1 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 1 | 1 |
| Escherichia coli str. K-12 substr. MG1655 | 1 | 1 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 3 | 2 |
| Photorhabdus luminescens subsp. laumondii TTO1 | 2 | 1 |
| Proteus mirabilis HI4320 | 2 | 1 |
| Salmonella typhimurium LT2 | 1 | 1 |
| Serratia proteamaculans 568 | 3 | 2 |
| Yersinia pestis KIM |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| PF10777 |
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Citrobacter koseri ATCC BAA-895 Site: position = -76 score = 8.52024 sequence = AACTGTTATGATAAA-(9)-ATCTGTTACTTTTTT Gene: CKO_02694: Extracytoplasmic function sigma factor YlaC |
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Enterobacter sp. 638 Site: position = -104 score = 8.76846 sequence = AACTGTTATGCTTTT-(9)-AACTGTTACTTTTTT Gene: Ent638_0938: Extracytoplasmic function sigma factor YlaC |
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Erwinia amylovora ATCC 49946 Site: position = -97 score = 7.90452 sequence = CACTGTTATAGCTTA-(9)-AACTGTGTCTGCTGT Gene: EAM_2946: Extracytoplasmic function sigma factor YlaC |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -121 score = 8.87487 sequence = AACTGTTATAGCCAA-(9)-AACTGTATCTGTTAT Gene: ECA3006: Extracytoplasmic function sigma factor YlaC |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -103 score = 6.80413 sequence = AACTGTTATGCAAAA-(9)-ATCTGTTACTTCCCC Gene: b0458: Extracytoplasmic function sigma factor YlaC |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -134 score = 8.22731 sequence = AACTGTTATGCTTTT-(9)-ATCTGTTACTTTCTC Gene: KPN_00439: Extracytoplasmic function sigma factor YlaC |
Gene: plu1841: Extracytoplasmic function sigma factor YlaC |
Gene: PMI1677: Extracytoplasmic function sigma factor YlaC |
*
Salmonella typhimurium LT2 Site: position = -106 score = 8.53802 sequence = AACTGTTATGCTAAT-(9)-ATCTGTTACTTTTTT Gene: STM0471: Extracytoplasmic function sigma factor YlaC |
*
Serratia proteamaculans 568 Site: position = -53 score = 6.11864 sequence = AACTGATCTACCTGC-(9)-ACTTGTGTTAGTTTG Gene: Spro_1865: Extracytoplasmic function sigma factor YlaC |
Gene: y1815: Extracytoplasmic function sigma factor YlaC |
Extracytoplasmic function sigma factor YlaC |
| CRON 2. | |||||||||||||
| PF01654 |
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|
*
Enterobacter sp. 638 Site: position = -93 score = 7.7037 sequence = AACTGTTATACCTAA-(9)-TTCTGACTCTGATAG Gene: Ent638_2131: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -94 score = 6.46992 sequence = AACTGTTATGATAAA-(9)-GACTGCCTCTGCCCC Gene: KPN_01930: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
*
Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -112 score = 9.00093 sequence = AACTGTTATAGTCAA-(9)-AACTGTCACTATTAT Gene: plu2043: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
*
Proteus mirabilis HI4320 Site: position = -129 score = 7.93364 sequence = AACTGTTATAGTCGT-(9)-TATTGTCACTATTAT Gene: PMI1434: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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*
Serratia proteamaculans 568 Site: position = -137 score = 7.96074 sequence = AACTGTTATATGAAA-(9)-AACTGTCACTATTAT Gene: Spro_2859: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
| PF02322 |
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Gene: Ent638_2132: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Gene: KPN_01931: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: plu2042: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Gene: PMI1435: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Gene: Spro_2860: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |