Regulog YdcR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1	1	1
Leptothrix cholodnii SP-6	4	2
Methylibium petroleiphilum PM1	3	1
Polaromonas naphthalenivorans CJ2	3	1
Polaromonas sp. JS666	2	1
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	3	1
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
COG0348	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -130 score = 8.64855 sequence = ATCTGATACGGTCGA-(9)-ATCTGCTGCTACCGC Gene: Daci_2449: Polyferredoxin	2 Leptothrix cholodnii SP-6 Gene: Lcho_1477: Polyferredoxin Gene: Lcho_0728: Polyferredoxin	Methylibium petroleiphilum PM1 Gene: Mpe_A2474: Polyferredoxin	* Polaromonas naphthalenivorans CJ2 Site: position = -98 score = 7.93512 sequence = AACTGATATGGTTTT-(9)-AACTGCATCTTACGC Gene: Pnap_2096: Polyferredoxin	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1166: Polyferredoxin	Polyferredoxin
COG2863	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3388: Probable cytochrome c2	Acidovorax sp. JS42 Gene: Ajs_2566: Probable cytochrome c2	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_2985: Probable cytochrome c2	* Leptothrix cholodnii SP-6 Site: position = -110 score = 7.10299 sequence = CGCTGATCCGATCGA-(10)-ATCTGCACCTGACCG Gene: Lcho_1322: Probable cytochrome c2	Methylibium petroleiphilum PM1 Gene: Mpe_A0754: Probable cytochrome c2	2 Polaromonas naphthalenivorans CJ2 Gene: Pnap_2095: Probable cytochrome c2 Gene: Pnap_1283: Probable cytochrome c2	* Polaromonas sp. JS666 Site: position = -44 score = 7.2904 sequence = ATCTGATGCTTACGC-(9)-ATGTGAGGCATGATT Site: position = -68 score = 9.23043 sequence = ATCTGATATGGTTTT-(9)-ATCTGATGCTTACGC Gene: Bpro_3448: Probable cytochrome c2	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4653: Probable cytochrome c2	Verminephrobacter eiseniae EF01-2	Probable cytochrome c2
COG3258	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3387: Putative diheme cytochrome c-553	Acidovorax sp. JS42 Gene: Ajs_2565: Putative diheme cytochrome c-553	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_2986: Putative diheme cytochrome c-553	Leptothrix cholodnii SP-6 Gene: Lcho_1321: Putative diheme cytochrome c-553	Methylibium petroleiphilum PM1 Gene: Mpe_A0755: Putative diheme cytochrome c-553	2 Polaromonas naphthalenivorans CJ2 Gene: Pnap_2094: Putative diheme cytochrome c-553 Gene: Pnap_1282: Putative diheme cytochrome c-553	Polaromonas sp. JS666 Gene: Bpro_3449: Putative diheme cytochrome c-553	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4654: Putative diheme cytochrome c-553	Verminephrobacter eiseniae EF01-2	Putative diheme cytochrome c-553
Mpe_A0753	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	* Methylibium petroleiphilum PM1 Site: position = -46 score = 7.68338 sequence = AACTGATCTGGTTTT-(9)-ATCTGAGCCTTCAAA Gene: Mpe_A0753: putative transmembrane protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -68 score = 8.6072 sequence = ATCTGCTCCGGTGAT-(9)-AACTGCATCTGTTTT Gene: Vapar_4652: putative transmembrane protein	Verminephrobacter eiseniae EF01-2	putative transmembrane protein
Daci_5825	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Leptothrix cholodnii SP-6 Site: position = -69 score = 8.30273 sequence = ATCTGATGCTATCGA-(10)-ATCTGAATCTACCGG Gene: Lcho_0727: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --