Regulog YdcR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 1 | 1 |
| Leptothrix cholodnii SP-6 | 4 | 2 |
| Methylibium petroleiphilum PM1 | 3 | 1 |
| Polaromonas naphthalenivorans CJ2 | 3 | 1 |
| Polaromonas sp. JS666 | 2 | 1 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 3 | 1 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| COG0348 |
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Delftia acidovorans SPH-1 Site: position = -130 score = 8.64855 sequence = ATCTGATACGGTCGA-(9)-ATCTGCTGCTACCGC Gene: Daci_2449: Polyferredoxin |
2
Leptothrix cholodnii SP-6 Gene: Lcho_1477: Polyferredoxin Gene: Lcho_0728: Polyferredoxin |
Gene: Mpe_A2474: Polyferredoxin |
*
Polaromonas naphthalenivorans CJ2 Site: position = -98 score = 7.93512 sequence = AACTGATATGGTTTT-(9)-AACTGCATCTTACGC Gene: Pnap_2096: Polyferredoxin |
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Gene: Veis_1166: Polyferredoxin |
Polyferredoxin |
| COG2863 |
Gene: Aave_3388: Probable cytochrome c2 |
Gene: Ajs_2566: Probable cytochrome c2 |
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Gene: Daci_2985: Probable cytochrome c2 |
*
Leptothrix cholodnii SP-6 Site: position = -110 score = 7.10299 sequence = CGCTGATCCGATCGA-(10)-ATCTGCACCTGACCG Gene: Lcho_1322: Probable cytochrome c2 |
Gene: Mpe_A0754: Probable cytochrome c2 |
2
Polaromonas naphthalenivorans CJ2 Gene: Pnap_2095: Probable cytochrome c2 Gene: Pnap_1283: Probable cytochrome c2 |
*
Polaromonas sp. JS666 Site: position = -44 score = 7.2904 sequence = ATCTGATGCTTACGC-(9)-ATGTGAGGCATGATT Site: position = -68 score = 9.23043 sequence = ATCTGATATGGTTTT-(9)-ATCTGATGCTTACGC Gene: Bpro_3448: Probable cytochrome c2 |
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Gene: Vapar_4653: Probable cytochrome c2 |
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Probable cytochrome c2 |
| COG3258 |
Gene: Aave_3387: Putative diheme cytochrome c-553 |
Gene: Ajs_2565: Putative diheme cytochrome c-553 |
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Gene: Daci_2986: Putative diheme cytochrome c-553 |
Gene: Lcho_1321: Putative diheme cytochrome c-553 |
Gene: Mpe_A0755: Putative diheme cytochrome c-553 |
2
Polaromonas naphthalenivorans CJ2 Gene: Pnap_2094: Putative diheme cytochrome c-553 Gene: Pnap_1282: Putative diheme cytochrome c-553 |
Gene: Bpro_3449: Putative diheme cytochrome c-553 |
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Gene: Vapar_4654: Putative diheme cytochrome c-553 |
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Putative diheme cytochrome c-553 |
| Mpe_A0753 |
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*
Methylibium petroleiphilum PM1 Site: position = -46 score = 7.68338 sequence = AACTGATCTGGTTTT-(9)-ATCTGAGCCTTCAAA Gene: Mpe_A0753: putative transmembrane protein |
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*
Variovorax paradoxus S110 Site: position = -68 score = 8.6072 sequence = ATCTGCTCCGGTGAT-(9)-AACTGCATCTGTTTT Gene: Vapar_4652: putative transmembrane protein |
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putative transmembrane protein |
| Daci_5825 |
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Leptothrix cholodnii SP-6 Site: position = -69 score = 8.30273 sequence = ATCTGATGCTATCGA-(10)-ATCTGAATCTACCGG Gene: Lcho_0727: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |