Regulog Daci_0595 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 7 | 1 |
| Acidovorax sp. JS42 | 5 | 1 |
| Comamonas testosteroni KF-1 | 3 | 2 |
| Delftia acidovorans SPH-1 | 3 | 2 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | 4 | 1 |
| Polaromonas naphthalenivorans CJ2 | 3 | 1 |
| Polaromonas sp. JS666 | 12 | 1 |
| Rhodoferax ferrireducens DSM 15236 | 6 | 1 |
| Variovorax paradoxus S110 | 10 | 1 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| PF01810 |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -130 score = 15.108 sequence = GAACTGTGTTG-(10)-CGGCACAGTTC-(15)-TGTCTGTATTG-(0)-GCACTGTAGCG Gene: Aave_4435: Transporter, LysE family |
*
Acidovorax sp. JS42 Site: position = -125 score = 15.7734 sequence = GCACTGTGCCA-(10)-CGATACAGTGC-(16)-TGACTGTATTG-(0)-GTACTGTAATG Gene: Ajs_3843: Transporter, LysE family |
*
Comamonas testosteroni KF-1 Site: position = -121 score = 17.6146 sequence = AAAGTGTCAGG-(10)-CAGGCCAGCTC-(15)-AAAGTGTACCG-(0)-ATAGTGTACTG Gene: CtesDRAFT_1190: Transporter, LysE family |
*2
Delftia acidovorans SPH-1 Site: position = -175 score = 15.4748 sequence = TCACTGTATCG-(10)-CAATACAGAAC-(15)-CAACTGTATTG-(0)-GCACTGTACAG Gene: Daci_0594: Transporter, LysE family Site: position = -142 score = 18.036 sequence = CAAGTGTCAGG-(10)-CAGGCCAGTTG-(15)-AAAGTGTACTG-(0)-CTACTGTACCG Gene: Daci_3667: Transporter, LysE family |
Gene: Lcho_3541: Transporter, LysE family |
|
|
*2
Polaromonas sp. JS666 Site: position = -92 score = 16.9909 sequence = TAAGTGTGCCG-(10)-CAATACAGTTT-(15)-CAACTGTATTG-(0)-GTAGTGTGCTG Gene: Bpro_4234: Transporter, LysE family Gene: Bpro_4244: Transporter, LysE family |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -114 score = 16.9844 sequence = AACCTGTGTTG-(10)-CAATACAGCTC-(15)-CAAGTGTACTG-(0)-CCAGTGTATTG Gene: Rfer_3726: Transporter, LysE family |
*3
Variovorax paradoxus S110 Site: position = -93 score = 16.3763 sequence = CTTCTGTGTCG-(10)-CAATACAGTTT-(15)-CAACTGTATCG-(0)-GAACTGTAATG Gene: Vapar_0747: Transporter, LysE family Gene: Vapar_0743: Transporter, LysE family Gene: Vapar_0739: Transporter, LysE family |
2
Verminephrobacter eiseniae EF01-2 Gene: Veis_3365: Transporter, LysE family Gene: Veis_0361: Transporter, LysE family |
Transporter, LysE family |
| PF00892 |
Gene: Aave_4436: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Ajs_3844: Permease of the drug/metabolite transporter (DMT) superfamily |
|
|
Gene: Lcho_3540: Permease of the drug/metabolite transporter (DMT) superfamily |
*
Methylibium petroleiphilum PM1 Site: position = -93 score = 15.8271 sequence = GGCGTGTGTCG-(10)-CAGTACAGATC-(15)-ATTCTGTACTG-(0)-TTAGTGTATTG Gene: Mpe_A0184: Permease of the drug/metabolite transporter (DMT) superfamily |
*
Polaromonas naphthalenivorans CJ2 Site: position = -197 score = 16.3651 sequence = GCCGTGTGCTG-(10)-CAATACAGTTT-(15)-AAACTGTATTG-(0)-GTGGTGTGCTG Gene: Pnap_0402: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Bpro_4235: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Rfer_3728: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Vapar_0746: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Veis_0052: Permease of the drug/metabolite transporter (DMT) superfamily |
Permease of the drug/metabolite transporter (DMT) superfamily |
| CtesDRAFT_4179 |
|
|
|
|
|
|
|
Gene: Bpro_4236: antibiotic biosynthesis monooxygenase |
|
|
|
antibiotic biosynthesis monooxygenase |
| Bpro_4237 |
|
|
|
|
|
|
|
Gene: Bpro_4237: hypothetical protein |
|
|
|
hypothetical protein |
| Aave_4745 |
Gene: Aave_4745: ThiJ/PfpI family protein |
|
|
|
|
Gene: Mpe_A2040: ThiJ/PfpI family protein |
|
Gene: Bpro_4238: ThiJ/PfpI family protein |
|
Gene: Vapar_0744: ThiJ/PfpI family protein |
|
ThiJ/PfpI family protein |
| Bpro_4239 |
|
|
|
|
|
|
|
Gene: Bpro_4239: hypothetical protein |
|
|
|
hypothetical protein |
| COG1167 |
Gene: Aave_4437: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Ajs_3845: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
*
Comamonas testosteroni KF-1 Site: position = -369 score = 15.008 sequence = GAACTGTATTG-(10)-CAATACAGAAG-(15)-TGTCTGTATAG-(0)-GTACTGTAATG Gene: CtesDRAFT_4335: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Daci_0593: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Lcho_3539: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Mpe_A0186: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Pnap_0401: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Bpro_4240: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Rfer_3729: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Vapar_0745: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Veis_0362: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
| Bpro_4241 |
Gene: Aave_4438: Glutathione S-transferase domain protein |
|
|
|
|
|
|
Gene: Bpro_4241: Glutathione S-transferase domain protein |
Gene: Rfer_3730: Glutathione S-transferase domain protein |
Gene: Vapar_0742: Glutathione S-transferase domain protein |
|
Glutathione S-transferase domain protein |
| phzF |
Gene: Aave_4439: Phenazine biosynthesis protein PhzF |
Gene: Ajs_3846: Phenazine biosynthesis protein PhzF |
Gene: CtesDRAFT_4334: Phenazine biosynthesis protein PhzF |
2
Delftia acidovorans SPH-1 Gene: Daci_5876: Phenazine biosynthesis protein PhzF Gene: Daci_0592: Phenazine biosynthesis protein PhzF |
Gene: Lcho_3538: Phenazine biosynthesis protein PhzF |
Gene: Mpe_A0187: Phenazine biosynthesis protein PhzF |
Gene: Pnap_0400: Phenazine biosynthesis protein PhzF |
Gene: Bpro_4242: Phenazine biosynthesis protein PhzF |
Gene: Rfer_3731: Phenazine biosynthesis protein PhzF |
Gene: Vapar_0741: Phenazine biosynthesis protein PhzF |
|
Phenazine biosynthesis protein PhzF |
| Aave_4440 |
Gene: Aave_4440: Riboflavin-specific deaminase |
|
|
|
|
|
|
Gene: Bpro_4243: Riboflavin-specific deaminase |
|
Gene: Vapar_0740: Riboflavin-specific deaminase |
Gene: Veis_0364: Riboflavin-specific deaminase |
Riboflavin-specific deaminase |
| Aave_4441 |
Gene: Aave_4441: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
Gene: Ajs_3847: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
|
|
|
|
|
Gene: Bpro_4245: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
|
Gene: Vapar_0738: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
Gene: Veis_4911: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19) |
| racX |
|
|
Gene: CtesDRAFT_2727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family |
Gene: Daci_4503: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family |
|
Gene: Mpe_A0185: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family |
|
|
Gene: Rfer_3727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family |
|
|
Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |