Regulog Daci_0595 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	7	1
Acidovorax sp. JS42	5	1
Comamonas testosteroni KF-1	3	2
Delftia acidovorans SPH-1	3	2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1	4	1
Polaromonas naphthalenivorans CJ2	3	1
Polaromonas sp. JS666	12	1
Rhodoferax ferrireducens DSM 15236	6	1
Variovorax paradoxus S110	10	1
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
PF01810	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -130 score = 15.108 sequence = GAACTGTGTTG-(10)-CGGCACAGTTC-(15)-TGTCTGTATTG-(0)-GCACTGTAGCG Gene: Aave_4435: Transporter, LysE family	* Acidovorax sp. JS42 Site: position = -125 score = 15.7734 sequence = GCACTGTGCCA-(10)-CGATACAGTGC-(16)-TGACTGTATTG-(0)-GTACTGTAATG Gene: Ajs_3843: Transporter, LysE family	* Comamonas testosteroni KF-1 Site: position = -121 score = 17.6146 sequence = AAAGTGTCAGG-(10)-CAGGCCAGCTC-(15)-AAAGTGTACCG-(0)-ATAGTGTACTG Gene: CtesDRAFT_1190: Transporter, LysE family	2 Delftia acidovorans SPH-1* Site: position = -175 score = 15.4748 sequence = TCACTGTATCG-(10)-CAATACAGAAC-(15)-CAACTGTATTG-(0)-GCACTGTACAG Gene: Daci_0594: Transporter, LysE family Site: position = -142 score = 18.036 sequence = CAAGTGTCAGG-(10)-CAGGCCAGTTG-(15)-AAAGTGTACTG-(0)-CTACTGTACCG Gene: Daci_3667: Transporter, LysE family	Leptothrix cholodnii SP-6 Gene: Lcho_3541: Transporter, LysE family	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	2 Polaromonas sp. JS666* Site: position = -92 score = 16.9909 sequence = TAAGTGTGCCG-(10)-CAATACAGTTT-(15)-CAACTGTATTG-(0)-GTAGTGTGCTG Gene: Bpro_4234: Transporter, LysE family Gene: Bpro_4244: Transporter, LysE family	* Rhodoferax ferrireducens DSM 15236 Site: position = -114 score = 16.9844 sequence = AACCTGTGTTG-(10)-CAATACAGCTC-(15)-CAAGTGTACTG-(0)-CCAGTGTATTG Gene: Rfer_3726: Transporter, LysE family	3 Variovorax paradoxus S110* Site: position = -93 score = 16.3763 sequence = CTTCTGTGTCG-(10)-CAATACAGTTT-(15)-CAACTGTATCG-(0)-GAACTGTAATG Gene: Vapar_0747: Transporter, LysE family Gene: Vapar_0743: Transporter, LysE family Gene: Vapar_0739: Transporter, LysE family	2 Verminephrobacter eiseniae EF01-2 Gene: Veis_3365: Transporter, LysE family Gene: Veis_0361: Transporter, LysE family	Transporter, LysE family
PF00892	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4436: Permease of the drug/metabolite transporter (DMT) superfamily	Acidovorax sp. JS42 Gene: Ajs_3844: Permease of the drug/metabolite transporter (DMT) superfamily	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3540: Permease of the drug/metabolite transporter (DMT) superfamily	* Methylibium petroleiphilum PM1 Site: position = -93 score = 15.8271 sequence = GGCGTGTGTCG-(10)-CAGTACAGATC-(15)-ATTCTGTACTG-(0)-TTAGTGTATTG Gene: Mpe_A0184: Permease of the drug/metabolite transporter (DMT) superfamily	* Polaromonas naphthalenivorans CJ2 Site: position = -197 score = 16.3651 sequence = GCCGTGTGCTG-(10)-CAATACAGTTT-(15)-AAACTGTATTG-(0)-GTGGTGTGCTG Gene: Pnap_0402: Permease of the drug/metabolite transporter (DMT) superfamily	Polaromonas sp. JS666 Gene: Bpro_4235: Permease of the drug/metabolite transporter (DMT) superfamily	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3728: Permease of the drug/metabolite transporter (DMT) superfamily	Variovorax paradoxus S110 Gene: Vapar_0746: Permease of the drug/metabolite transporter (DMT) superfamily	Verminephrobacter eiseniae EF01-2 Gene: Veis_0052: Permease of the drug/metabolite transporter (DMT) superfamily	Permease of the drug/metabolite transporter (DMT) superfamily
CtesDRAFT_4179	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4236: antibiotic biosynthesis monooxygenase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	antibiotic biosynthesis monooxygenase
Bpro_4237	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4237: hypothetical protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein
Aave_4745	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4745: ThiJ/PfpI family protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A2040: ThiJ/PfpI family protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4238: ThiJ/PfpI family protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0744: ThiJ/PfpI family protein	Verminephrobacter eiseniae EF01-2	ThiJ/PfpI family protein
Bpro_4239	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4239: hypothetical protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein
COG1167	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4437: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Acidovorax sp. JS42 Gene: Ajs_3845: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	* Comamonas testosteroni KF-1 Site: position = -369 score = 15.008 sequence = GAACTGTATTG-(10)-CAATACAGAAG-(15)-TGTCTGTATAG-(0)-GTACTGTAATG Gene: CtesDRAFT_4335: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Delftia acidovorans SPH-1 Gene: Daci_0593: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Leptothrix cholodnii SP-6 Gene: Lcho_3539: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A0186: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0401: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Polaromonas sp. JS666 Gene: Bpro_4240: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3729: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Variovorax paradoxus S110 Gene: Vapar_0745: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_0362: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
Bpro_4241	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4438: Glutathione S-transferase domain protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4241: Glutathione S-transferase domain protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3730: Glutathione S-transferase domain protein	Variovorax paradoxus S110 Gene: Vapar_0742: Glutathione S-transferase domain protein	Verminephrobacter eiseniae EF01-2	Glutathione S-transferase domain protein
phzF	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4439: Phenazine biosynthesis protein PhzF	Acidovorax sp. JS42 Gene: Ajs_3846: Phenazine biosynthesis protein PhzF	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4334: Phenazine biosynthesis protein PhzF	2 Delftia acidovorans SPH-1 Gene: Daci_5876: Phenazine biosynthesis protein PhzF Gene: Daci_0592: Phenazine biosynthesis protein PhzF	Leptothrix cholodnii SP-6 Gene: Lcho_3538: Phenazine biosynthesis protein PhzF	Methylibium petroleiphilum PM1 Gene: Mpe_A0187: Phenazine biosynthesis protein PhzF	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0400: Phenazine biosynthesis protein PhzF	Polaromonas sp. JS666 Gene: Bpro_4242: Phenazine biosynthesis protein PhzF	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3731: Phenazine biosynthesis protein PhzF	Variovorax paradoxus S110 Gene: Vapar_0741: Phenazine biosynthesis protein PhzF	Verminephrobacter eiseniae EF01-2	Phenazine biosynthesis protein PhzF
Aave_4440	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4440: Riboflavin-specific deaminase	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4243: Riboflavin-specific deaminase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0740: Riboflavin-specific deaminase	Verminephrobacter eiseniae EF01-2 Gene: Veis_0364: Riboflavin-specific deaminase	Riboflavin-specific deaminase
Aave_4441	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4441: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)	Acidovorax sp. JS42 Gene: Ajs_3847: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4245: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0738: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4911: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)	Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
racX	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family	Delftia acidovorans SPH-1 Gene: Daci_4503: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A0185: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Daci_0595 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --