Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ2 - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Gluconacetobacter diazotrophicus PAl 5 4 3
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Azospirillum sp. B510
Acetobacter pasteurianus IFO 3283-01
Magnetospirillum magneticum AMB-1
Magnetospirillum magnetotacticum MS-1
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170 4 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxQ2
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -112
score = 5.73562
sequence = TCAATTGTATT-(0)-AGTACAATTTC

Site:
position = -37
score = 6.68541
sequence = TATATTGTCAT-(0)-AGTTCAATCAA

Gene: Gdia_0682: Transcriptional regulator, GntR/MocR family
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -43
score = 7.55345
sequence = TAGATTGTCAC-(1)-GTAACAATTTA

Gene: Rru_A3041: Transcriptional regulator, GntR/MocR family
Transcriptional regulator, GntR/MocR family
 
CRON 2.
PF01810
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -35
score = 7.66509
sequence = CAAAGTGTCCT-(0)-ATGACAGGTTG

Gene: Rru_A3759: Transporter, LysE family
Transporter, LysE family
 
CRON 3.
Gdia_1401
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -89
score = 9.21821
sequence = AAAAGTGTCAC-(0)-GTGACACTATA

Gene: Gdia_1401: Antibiotic biosynthesis monooxygenase
 
Gluconobacter oxydans 621H

Gene: GOX1098: Antibiotic biosynthesis monooxygenase
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_22970: Antibiotic biosynthesis monooxygenase
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
Antibiotic biosynthesis monooxygenase
 
CRON 4.
pdxQ2
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1400: Transcriptional regulator, GntR/MocR family
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -191
score = 7.66509
sequence = CAACCTGTCAT-(0)-AGGACACTTTG

Gene: Rru_A3760: Transcriptional regulator, GntR/MocR family
Transcriptional regulator, GntR/MocR family
 
CRON 5.
Gdia_0681
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -57
score = 5.73562
sequence = GAAATTGTACT-(0)-AATACAATTGA

Site:
position = -132
score = 6.68541
sequence = TTGATTGAACT-(0)-ATGACAATATA

Gene: Gdia_0681: hypothetical protein
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
hypothetical protein
phzF
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0680: Phenazine biosynthesis protein PhzF
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03003362: Phenazine biosynthesis protein PhzF
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
Phenazine biosynthesis protein PhzF
 
CRON 6.
Rru_A3040
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
 
Magnetospirillum magneticum AMB-1
 
Magnetospirillum magnetotacticum MS-1
 
Rhodospirillum centenum SW
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -105
score = 7.55345
sequence = TAAATTGTTAC-(1)-GTGACAATCTA

Gene: Rru_A3040: Cysteine desulfurase (EC 2.8.1.7)
Cysteine desulfurase (EC 2.8.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD