Regulog PdxQ2 - Rhodospirillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Rhodospirillales
By TF family - GntR/MocR
By pathway - Metabolite transport
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Gluconacetobacter diazotrophicus PAl 5	4	3
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Azospirillum sp. B510
Acetobacter pasteurianus IFO 3283-01
Magnetospirillum magneticum AMB-1
Magnetospirillum magnetotacticum MS-1
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170	4	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
pdxQ2	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -112 score = 5.73562 sequence = TCAATTGTATT-(0)-AGTACAATTTC Site: position = -37 score = 6.68541 sequence = TATATTGTCAT-(0)-AGTTCAATCAA Gene: Gdia_0682: Transcriptional regulator, GntR/MocR family	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	* Rhodospirillum rubrum ATCC 11170 Site: position = -43 score = 7.55345 sequence = TAGATTGTCAC-(1)-GTAACAATTTA Gene: Rru_A3041: Transcriptional regulator, GntR/MocR family	Transcriptional regulator, GntR/MocR family

CRON 2.
PF01810	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	* Rhodospirillum rubrum ATCC 11170 Site: position = -35 score = 7.66509 sequence = CAAAGTGTCCT-(0)-ATGACAGGTTG Gene: Rru_A3759: Transporter, LysE family	Transporter, LysE family

CRON 3.
Gdia_1401	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -89 score = 9.21821 sequence = AAAAGTGTCAC-(0)-GTGACACTATA Gene: Gdia_1401: Antibiotic biosynthesis monooxygenase	Gluconobacter oxydans 621H Gene: GOX1098: Antibiotic biosynthesis monooxygenase	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_22970: Antibiotic biosynthesis monooxygenase	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Antibiotic biosynthesis monooxygenase

CRON 4.
pdxQ2	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_1400: Transcriptional regulator, GntR/MocR family	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	* Rhodospirillum rubrum ATCC 11170 Site: position = -191 score = 7.66509 sequence = CAACCTGTCAT-(0)-AGGACACTTTG Gene: Rru_A3760: Transcriptional regulator, GntR/MocR family	Transcriptional regulator, GntR/MocR family

CRON 5.
Gdia_0681	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -57 score = 5.73562 sequence = GAAATTGTACT-(0)-AATACAATTGA Site: position = -132 score = 6.68541 sequence = TTGATTGAACT-(0)-ATGACAATATA Gene: Gdia_0681: hypothetical protein	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	hypothetical protein
phzF	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0680: Phenazine biosynthesis protein PhzF	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1 Gene: Magn03003362: Phenazine biosynthesis protein PhzF	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Phenazine biosynthesis protein PhzF

CRON 6.
Rru_A3040	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	* Rhodospirillum rubrum ATCC 11170 Site: position = -105 score = 7.55345 sequence = TAAATTGTTAC-(1)-GTGACAATCTA Gene: Rru_A3040: Cysteine desulfurase (EC 2.8.1.7)	Cysteine desulfurase (EC 2.8.1.7)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ2 - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --