Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ - Streptomycetaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Streptomyces avermitilis MA-4680 2 2
Streptomyces coelicolor A3(2) 2 2
Streptomyces griseus subsp. griseus NBRC 13350 2 2
Streptomyces scabiei 87.22 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxQ
*
Streptomyces avermitilis MA-4680

Site:
position = -142
score = 8.01169
sequence = AGCGCTATCCT-(15)-AGCGTAGCAGC

Gene: SAV_6752: Transcriptional regulator, GntR/MocR family
*
Streptomyces coelicolor A3(2)

Site:
position = -55
score = 7.90217
sequence = AGCGCTACTCT-(15)-AGCGTAGCAGC

Gene: SCO1587: Transcriptional regulator, GntR/MocR family
*
Streptomyces griseus subsp. griseus NBRC 13350

Site:
position = -19
score = 8.05379
sequence = AGCGCTATTGT-(15)-AGCGTAGCAGC

Gene: SGR_5946: Transcriptional regulator, GntR/MocR family
*
Streptomyces scabiei 87.22

Site:
position = -19
score = 8.33384
sequence = AGCGCTACTCT-(15)-AGCGTAGCAGT

Gene: SCAB_74111: Transcriptional regulator, GntR/MocR family
Transcriptional regulator, GntR/MocR family
 
CRON 2.
PF00892
*
Streptomyces avermitilis MA-4680

Site:
position = -16
score = 8.01169
sequence = GCTGCTACGCT-(15)-AGGATAGCGCT

Gene: SAV_6751: Permease of the drug/metabolite transporter (DMT) superfamily
*
Streptomyces coelicolor A3(2)

Site:
position = -16
score = 7.90217
sequence = GCTGCTACGCT-(15)-AGAGTAGCGCT

Gene: SCO1588: Permease of the drug/metabolite transporter (DMT) superfamily
*
Streptomyces griseus subsp. griseus NBRC 13350

Site:
position = -16
score = 8.05379
sequence = GCTGCTACGCT-(15)-ACAATAGCGCT

Gene: SGR_5945: Permease of the drug/metabolite transporter (DMT) superfamily
*
Streptomyces scabiei 87.22

Site:
position = -85
score = 8.33384
sequence = ACTGCTACGCT-(15)-AGAGTAGCGCT

Gene: SCAB_74101: Permease of the drug/metabolite transporter (DMT) superfamily
Permease of the drug/metabolite transporter (DMT) superfamily
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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