Regulog GabR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 10 | 3 |
| Bordetella bronchiseptica RB50 | 7 | 2 |
| Bordetella petrii DSM 12804 | 7 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| gabT |
*
Bordetella avium 197N Site: position = -138 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: BAV2548: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bordetella bronchiseptica RB50 Site: position = -136 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: BB1807: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Bordetella petrii DSM 12804 Site: position = -143 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: Bpet3403: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabD |
Gene: BAV2549: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: BB1806: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bpet3404: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
| CRON 2. | ||||
| dppA |
*
Bordetella avium 197N Site: position = -356 score = 10.8137 sequence = GTGGCAC-(17)-TTGGATC-(8)-GTACCAA Gene: BAV2195: ABC-type peptide transporter, periplasmic oligopeptide-binding protein |
*
Bordetella bronchiseptica RB50 Site: position = -418 score = 10.3435 sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA Gene: BB1884: ABC-type peptide transporter, periplasmic oligopeptide-binding protein |
*
Bordetella petrii DSM 12804 Site: position = -285 score = 10.3435 sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA Gene: Bpet3079: ABC-type peptide transporter, periplasmic oligopeptide-binding protein |
ABC-type peptide transporter, periplasmic oligopeptide-binding protein |
| dppB |
Gene: BAV2196: ABC-type peptide transport system permease protein |
Gene: BB1883: ABC-type peptide transport system permease protein |
Gene: Bpet3080: ABC-type peptide transport system permease protein |
ABC-type peptide transport system permease protein |
| dppC |
Gene: BAV2197: ABC-type peptide transport system permease protein |
Gene: BB1882: ABC-type peptide transport system permease protein |
Gene: Bpet3081: ABC-type peptide transport system permease protein |
ABC-type peptide transport system permease protein |
| dppD |
Gene: BAV2198: ABC-type peptide transporter, ATP-binding protein |
Gene: BB1881: ABC-type peptide transporter, ATP-binding protein |
Gene: Bpet3082: ABC-type peptide transporter, ATP-binding protein |
ABC-type peptide transporter, ATP-binding protein |
| gabT2 |
Gene: BAV2199: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gene: BB1880: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gene: Bpet3083: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| CRON 3. | ||||
| argE |
*
Bordetella avium 197N Site: position = -89 score = 9.94299 sequence = GTGGCTA-(16)-CTGGCTA-(9)-GGGCCAG Gene: BAV0460: Acetylornithine deacetylase (EC 3.5.1.16) |
|
|
Acetylornithine deacetylase (EC 3.5.1.16) |
| BAV0461 |
Gene: BAV0461: aminoglycoside phosphotransferase |
|
|
aminoglycoside phosphotransferase |
| gabT3 |
Gene: BAV0462: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
|
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |