Regulog GabR - Alcaligenaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Alcaligenaceae
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bordetella avium 197N	10	3
Bordetella bronchiseptica RB50	7	2
Bordetella petrii DSM 12804	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes				Function

CRON 1.
gabT	* Bordetella avium 197N Site: position = -138 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: BAV2548: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bordetella bronchiseptica RB50 Site: position = -136 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: BB1807: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Bordetella petrii DSM 12804 Site: position = -143 score = 11.7731 sequence = TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT Gene: Bpet3403: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD	Bordetella avium 197N Gene: BAV2549: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bordetella bronchiseptica RB50 Gene: BB1806: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Bordetella petrii DSM 12804 Gene: Bpet3404: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

CRON 2.
dppA	* Bordetella avium 197N Site: position = -356 score = 10.8137 sequence = GTGGCAC-(17)-TTGGATC-(8)-GTACCAA Gene: BAV2195: ABC-type peptide transporter, periplasmic oligopeptide-binding protein	* Bordetella bronchiseptica RB50 Site: position = -418 score = 10.3435 sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA Gene: BB1884: ABC-type peptide transporter, periplasmic oligopeptide-binding protein	* Bordetella petrii DSM 12804 Site: position = -285 score = 10.3435 sequence = GTGGCAC-(17)-TTGGACC-(8)-GTACCAA Gene: Bpet3079: ABC-type peptide transporter, periplasmic oligopeptide-binding protein	ABC-type peptide transporter, periplasmic oligopeptide-binding protein
dppB	Bordetella avium 197N Gene: BAV2196: ABC-type peptide transport system permease protein	Bordetella bronchiseptica RB50 Gene: BB1883: ABC-type peptide transport system permease protein	Bordetella petrii DSM 12804 Gene: Bpet3080: ABC-type peptide transport system permease protein	ABC-type peptide transport system permease protein
dppC	Bordetella avium 197N Gene: BAV2197: ABC-type peptide transport system permease protein	Bordetella bronchiseptica RB50 Gene: BB1882: ABC-type peptide transport system permease protein	Bordetella petrii DSM 12804 Gene: Bpet3081: ABC-type peptide transport system permease protein	ABC-type peptide transport system permease protein
dppD	Bordetella avium 197N Gene: BAV2198: ABC-type peptide transporter, ATP-binding protein	Bordetella bronchiseptica RB50 Gene: BB1881: ABC-type peptide transporter, ATP-binding protein	Bordetella petrii DSM 12804 Gene: Bpet3082: ABC-type peptide transporter, ATP-binding protein	ABC-type peptide transporter, ATP-binding protein
gabT2	Bordetella avium 197N Gene: BAV2199: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Bordetella bronchiseptica RB50 Gene: BB1880: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Bordetella petrii DSM 12804 Gene: Bpet3083: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

CRON 3.
argE	* Bordetella avium 197N Site: position = -89 score = 9.94299 sequence = GTGGCTA-(16)-CTGGCTA-(9)-GGGCCAG Gene: BAV0460: Acetylornithine deacetylase (EC 3.5.1.16)	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804	Acetylornithine deacetylase (EC 3.5.1.16)
BAV0461	Bordetella avium 197N Gene: BAV0461: aminoglycoside phosphotransferase	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804	aminoglycoside phosphotransferase
gabT3	Bordetella avium 197N Gene: BAV0462: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Bordetella bronchiseptica RB50	Bordetella petrii DSM 12804	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Alcaligenaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --