Regulog FdsR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ModE
Regulation mode:	repressor (activator)
Biological process:	Formate oxydation
Effector:	Formate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - ModE
By effector - Formate
By pathway - Formate oxydation

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp	5	2
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
fdsR	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -94 score = 5.99781 sequence = ATATGAAGTAAAGTTCTTAT Site: position = -18 score = 5.5722 sequence = ATATGAATCCTTGAACATAT Gene: Pmen_0386: Formate dehydrogenase transcriptional regulator FdsR, ModE family	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Formate dehydrogenase transcriptional regulator FdsR, ModE family

CRON 2.
fdsG	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN1826: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Pseudomonas fluorescens Pf-5 Gene: PFL_0331: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	* Pseudomonas mendocina ymp Site: position = -124 score = 5.99781 sequence = ATAAGAACTTTACTTCATAT Site: position = -200 score = 5.5722 sequence = ATATGTTCAAGGATTCATAT Gene: Pmen_0387: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Pseudomonas putida KT2440 Gene: PP2183: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit
fdsB	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN1827: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Pseudomonas fluorescens Pf-5 Gene: PFL_0330: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Pseudomonas mendocina ymp Gene: Pmen_0388: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Pseudomonas putida KT2440 Gene: PP2184: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit
fdsA	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN1828: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Pseudomonas fluorescens Pf-5 Gene: PFL_0329: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Pseudomonas mendocina ymp Gene: Pmen_0389: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Pseudomonas putida KT2440 Gene: PP2185: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit
fdsD	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN1829: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Pseudomonas fluorescens Pf-5 Gene: PFL_0328: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Pseudomonas mendocina ymp Gene: Pmen_0390: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Pseudomonas putida KT2440 Gene: PP2186: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FdsR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --