Regulog FdsR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | ModE |
| Regulation mode: | repressor (activator) |
| Biological process: | Formate oxydation |
| Effector: | Formate |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - ModE
- By effector - Formate
- By pathway - Formate oxydation
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 5 | 2 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| fdsR |
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Pseudomonas mendocina ymp Site: position = -94 score = 5.99781 sequence = ATATGAAGTAAAGTTCTTAT Site: position = -18 score = 5.5722 sequence = ATATGAATCCTTGAACATAT Gene: Pmen_0386: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
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Formate dehydrogenase transcriptional regulator FdsR, ModE family |
| CRON 2. | |||||||||
| fdsG |
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Gene: PSEEN1826: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
Gene: PFL_0331: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
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Pseudomonas mendocina ymp Site: position = -124 score = 5.99781 sequence = ATAAGAACTTTACTTCATAT Site: position = -200 score = 5.5722 sequence = ATATGTTCAAGGATTCATAT Gene: Pmen_0387: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
Gene: PP2183: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
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NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
| fdsB |
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Gene: PSEEN1827: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: PFL_0330: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Pmen_0388: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: PP2184: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
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NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
| fdsA |
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Gene: PSEEN1828: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: PFL_0329: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Pmen_0389: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: PP2185: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
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NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
| fdsD |
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Gene: PSEEN1829: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: PFL_0328: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Pmen_0390: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: PP2186: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
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NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |