Regulog FdsR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	ModE
Regulation mode:	repressor (activator)
Biological process:	Formate oxydation
Effector:	Formate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - ModE
By effector - Formate
By pathway - Formate oxydation

Statistics of regulated genes
Genome	Genes	Operons
Marinomonas sp. MWYL1
Chromohalobacter salexigens DSM 3043
Alcanivorax borkumensis SK2
Hahella chejuensis KCTC 2396
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Cellvibrio japonicus Ueda107
Marinobacter aqueolei
Marinobacter sp. ELB17	6	2
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
fdsG	Marinomonas sp. MWYL1 Gene: Mmwyl1_2276: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -103 score = 5.78652 sequence = TTATGCAATTTTATTCATAT Site: position = -12 score = 5.97273 sequence = GTAGGAACAATTATGCATAT Gene: MELB17_23340: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit
fdsB	Marinomonas sp. MWYL1 Gene: Mmwyl1_2275: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_23335: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit
fdsA	Marinomonas sp. MWYL1 Gene: Mmwyl1_2274: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_23330: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit
fdsC	Marinomonas sp. MWYL1	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_23325: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein
fdsD	Marinomonas sp. MWYL1 Gene: Mmwyl1_2273: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_23320: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit

CRON 2.
fdsR	Marinomonas sp. MWYL1	Chromohalobacter salexigens DSM 3043	Alcanivorax borkumensis SK2	Hahella chejuensis KCTC 2396	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Cellvibrio japonicus Ueda107	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -103 score = 5.97273 sequence = ATATGCATAATTGTTCCTAC Site: position = -12 score = 5.78652 sequence = ATATGAATAAAATTGCATAA Gene: MELB17_23345: Formate dehydrogenase transcriptional regulator FdsR, ModE family	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Formate dehydrogenase transcriptional regulator FdsR, ModE family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FdsR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --