Regulog FdsR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | ModE |
| Regulation mode: | repressor (activator) |
| Biological process: | Formate oxydation |
| Effector: | Formate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - ModE
- By effector - Formate
- By pathway - Formate oxydation
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | 4 | 2 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 6 | 2 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| fdsG |
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Gene: Lcho_2752: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
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Methylibium petroleiphilum PM1 Site: position = -167 score = 5.75651 sequence = TTCGGCGCTTCAGCGCATAT Gene: Mpe_A3708: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
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Variovorax paradoxus S110 Site: position = -119 score = 5.75651 sequence = TTCGGCTTTCCAAAGCATAT Gene: Vapar_3017: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
Gene: Veis_2385: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
| fdsB |
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Gene: CtesDRAFT_2782: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Daci_1860: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Lcho_2751: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Mpe_A3709: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
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Gene: Vapar_3018: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Veis_2384: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
| fdsA |
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Gene: CtesDRAFT_2781: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Daci_1861: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Lcho_2750: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Mpe_A3710: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
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Gene: Vapar_3019: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Veis_2383: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
| fdsC |
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Gene: Vapar_3020: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: Veis_2382: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
| fdsD |
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Gene: CtesDRAFT_2780: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Daci_1862: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Lcho_2749: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
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Gene: Vapar_3021: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Veis_2381: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
| CRON 2. | ||||||||||||
| fdsR |
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Methylibium petroleiphilum PM1 Site: position = -28 score = 5.75651 sequence = ATATGCGCTGAAGCGCCGAA Gene: Mpe_A3707: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
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Variovorax paradoxus S110 Site: position = -24 score = 5.75651 sequence = ATATGCTTTGGAAAGCCGAA Gene: Vapar_3016: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
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Formate dehydrogenase transcriptional regulator FdsR, ModE family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |