Regulog FdsR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ModE
Regulation mode:	repressor (activator)
Biological process:	Formate oxydation
Effector:	Formate
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - ModE
By effector - Formate
By pathway - Formate oxydation

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1	4	2
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	6	2
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
fdsG	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_2752: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	* Methylibium petroleiphilum PM1 Site: position = -167 score = 5.75651 sequence = TTCGGCGCTTCAGCGCATAT Gene: Mpe_A3708: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -119 score = 5.75651 sequence = TTCGGCTTTCCAAAGCATAT Gene: Vapar_3017: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2385: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit	NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit
fdsB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2782: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Delftia acidovorans SPH-1 Gene: Daci_1860: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2751: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A3709: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3018: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2384: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit	NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit
fdsA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2781: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Delftia acidovorans SPH-1 Gene: Daci_1861: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2750: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A3710: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3019: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2383: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit	NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit
fdsC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3020: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_2382: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein	NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein
fdsD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2780: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Delftia acidovorans SPH-1 Gene: Daci_1862: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2749: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3021: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2381: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit	NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit

CRON 2.
fdsR	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	* Methylibium petroleiphilum PM1 Site: position = -28 score = 5.75651 sequence = ATATGCGCTGAAGCGCCGAA Gene: Mpe_A3707: Formate dehydrogenase transcriptional regulator FdsR, ModE family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -24 score = 5.75651 sequence = ATATGCTTTGGAAAGCCGAA Gene: Vapar_3016: Formate dehydrogenase transcriptional regulator FdsR, ModE family	Verminephrobacter eiseniae EF01-2	Formate dehydrogenase transcriptional regulator FdsR, ModE family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FdsR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --