Regulog TauR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Taurine utilization |
| Effector: | Taurine |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/MocR
- By effector - Taurine
- By pathway - Taurine utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | ||
| Rhodococcus erythropolis PR4 | ||
| Rhodococcus opacus B4 | 8 | 5 |
| Rhodococcus sp. RHA1 | 9 | 5 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| thiG |
|
|
*
Rhodococcus opacus B4 Site: position = -92 score = 8.12321 sequence = CTGGACCTAT-(14)-GTGGCTCTGA Gene: ROP_33900: Thiazole biosynthesis protein ThiG |
*
Rhodococcus sp. RHA1 Site: position = -95 score = 7.99815 sequence = CTGGACCTAT-(14)-GTGGTTCTGA Gene: RHA1_ro03594: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| CRON 2. | |||||
| ald |
|
|
*
Rhodococcus opacus B4 Site: position = -127 score = 8.87371 sequence = CTGGTCCCCG-(14)-CTGGTCCTTC Gene: ROP_33410: Alanine dehydrogenase (EC 1.4.1.1) |
*
Rhodococcus sp. RHA1 Site: position = -129 score = 8.87371 sequence = CTGGTCCCCG-(14)-CTGGTCCTTC Gene: RHA1_ro03547: Alanine dehydrogenase (EC 1.4.1.1) |
Alanine dehydrogenase (EC 1.4.1.1) |
| tauR |
|
|
Gene: ROP_33420: Taurine utilization regulator, GntR family |
Gene: RHA1_ro03548: Taurine utilization regulator, GntR family |
Taurine utilization regulator, GntR family |
| CRON 3. | |||||
| gabP |
|
|
*2
Rhodococcus opacus B4 Site: position = -205 score = 8.81803 sequence = CTGGACCTCA-(14)-CTGGCACTGT Gene: ROP_33850: Gamma-aminobutyrate permease Site: position = -126 score = 8.52156 sequence = CTGGTTCCTG-(14)-CTGGCTCTGG Gene: ROP_33570: Gamma-aminobutyrate permease |
*2
Rhodococcus sp. RHA1 Site: position = -63 score = 9.19543 sequence = CTGGACCCAT-(14)-CTGGCTCTGG Gene: RHA1_ro03588: Gamma-aminobutyrate permease Site: position = -207 score = 8.81803 sequence = CTGGTCCTCA-(14)-CTGGCACTGT Gene: RHA1_ro03589: Gamma-aminobutyrate permease |
Gamma-aminobutyrate permease |
| pdxS2 |
|
|
|
2
Rhodococcus sp. RHA1 Gene: RHA1_ro06884: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: RHA1_ro03587: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| CRON 4. | |||||
| tpa |
|
|
*
Rhodococcus opacus B4 Site: position = -90 score = 9.07037 sequence = CTGGACCCAT-(14)-CTGGTTCTGA Gene: ROP_33400: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
*
Rhodococcus sp. RHA1 Site: position = -96 score = 9.19543 sequence = CTGGACCCAT-(14)-CTGGCCCTGA Gene: RHA1_ro03546: Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
Taurine--pyruvate aminotransferase (EC 2.6.1.77) |
| pta |
|
|
Gene: ROP_33390: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: RHA1_ro03545: Phosphate acetyltransferase (EC 2.3.1.8) |
Phosphate acetyltransferase (EC 2.3.1.8) |
| tauE |
|
|
Gene: ROP_33380: Sulfite exporter |
Gene: RHA1_ro03544: Sulfite exporter |
Sulfite exporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |