Regulog BirA - Chlorobiales

Properties
Regulator type:	Transcription factor
Regulator family:	BirA
Regulation mode:	repressor
Biological process:	Biotin biosynthesis
Effector:	Biotin
Phylum:	Chlorobiales
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By trascription factor - BirA
By taxonomy - Chlorobiales
By TF family - BirA
By effector - Biotin
By pathway - Biotin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Chlorobaculum parvum NCIB 8327	8	1
Chlorobium chlorochromatii CaD3	7	1
Chlorobium ferrooxidans DSM 13031	8	1
Chlorobium limicola DSM 245	9	1
Chlorobium phaeobacteroides BS1	8	1
Chlorobium phaeobacteroides DSM 266	7	1
Chloroherpeton thalassium ATCC 35110
Pelodictyon luteolum DSM 273	9	1
Pelodictyon phaeoclathratiforme BU-1	8	1
Prosthecochloris aestuarii DSM 271	7	1
Prosthecochloris vibrioformis DSM 265	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
birA	* Chlorobaculum parvum NCIB 8327 Site: position = -145 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cpar_2017: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Chlorobium chlorochromatii CaD3 Site: position = -45 score = 7.76215 sequence = TTATCAAC-(16)-GTTAATAA Gene: Cag_0077: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Chlorobium ferrooxidans DSM 13031 Site: position = -89 score = 8.4231 sequence = TTGTCAAC-(16)-GTTCACAT Gene: CferDRAFT_1619: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Chlorobium limicola DSM 245 Site: position = -66 score = 8.88591 sequence = TTGTCAAC-(16)-GTTGACAG Gene: Clim_2431: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Chlorobium phaeobacteroides BS1 Site: position = -93 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cphamn1_2459: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Chlorobium phaeobacteroides DSM 266 Site: position = -74 score = 8.90209 sequence = TTGTCAAC-(16)-GTTTACAA Gene: Cpha266_0111: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	Chloroherpeton thalassium ATCC 35110	* Pelodictyon luteolum DSM 273 Site: position = -55 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Plut_2071: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Pelodictyon phaeoclathratiforme BU-1 Site: position = -68 score = 7.96029 sequence = TTGTAAAC-(16)-GTTCACAT Gene: Ppha_2840: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Prosthecochloris aestuarii DSM 271 Site: position = -61 score = 8.24095 sequence = TTGTCAAC-(16)-GTTGACGG Gene: Paes_2191: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	* Prosthecochloris vibrioformis DSM 265 Site: position = -75 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cvib_1712: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor	Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
bioB	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2016: Biotin synthase (EC 2.8.1.6)	Chlorobium chlorochromatii CaD3 Gene: Cag_0078: Biotin synthase (EC 2.8.1.6)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1618: Biotin synthase (EC 2.8.1.6)	Chlorobium limicola DSM 245 Gene: Clim_2430: Biotin synthase (EC 2.8.1.6)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2458: Biotin synthase (EC 2.8.1.6)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0112: Biotin synthase (EC 2.8.1.6)	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2070: Biotin synthase (EC 2.8.1.6)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2839: Biotin synthase (EC 2.8.1.6)	Prosthecochloris aestuarii DSM 271 Gene: Paes_2190: Biotin synthase (EC 2.8.1.6)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1711: Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)
bioF	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2015: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chlorobium chlorochromatii CaD3 Gene: Cag_0079: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1617: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chlorobium limicola DSM 245 Gene: Clim_2429: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2457: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0113: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2069: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2838: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Prosthecochloris aestuarii DSM 271 Gene: Paes_2189: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1710: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioG	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2014: Biotin synthesis protein bioG	Chlorobium chlorochromatii CaD3 Gene: Cag_0080: Biotin synthesis protein bioG	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1616: Biotin synthesis protein bioG	Chlorobium limicola DSM 245 Gene: Clim_2428: Biotin synthesis protein bioG	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2456: Biotin synthesis protein bioG	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0114: Biotin synthesis protein bioG	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2068: Biotin synthesis protein bioG	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2837: Biotin synthesis protein bioG	Prosthecochloris aestuarii DSM 271 Gene: Paes_2188: Biotin synthesis protein bioG	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1709: Biotin synthesis protein bioG	Biotin synthesis protein bioG
bioC	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2013: Biotin synthesis protein bioC	Chlorobium chlorochromatii CaD3 Gene: Cag_0081: Biotin synthesis protein bioC	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1615: Biotin synthesis protein bioC	Chlorobium limicola DSM 245 Gene: Clim_2427: Biotin synthesis protein bioC	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2455: Biotin synthesis protein bioC	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0115: Biotin synthesis protein bioC	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2067: Biotin synthesis protein bioC	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2836: Biotin synthesis protein bioC	Prosthecochloris aestuarii DSM 271 Gene: Paes_2187: Biotin synthesis protein bioC	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1708: Biotin synthesis protein bioC	Biotin synthesis protein bioC
bioD	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2012: Dethiobiotin synthetase (EC 6.3.3.3)	Chlorobium chlorochromatii CaD3 Gene: Cag_0082: Dethiobiotin synthetase (EC 6.3.3.3)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1614: Dethiobiotin synthetase (EC 6.3.3.3)	Chlorobium limicola DSM 245 Gene: Clim_2426: Dethiobiotin synthetase (EC 6.3.3.3)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2454: Dethiobiotin synthetase (EC 6.3.3.3)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0116: Dethiobiotin synthetase (EC 6.3.3.3)	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2066: Dethiobiotin synthetase (EC 6.3.3.3)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2835: Dethiobiotin synthetase (EC 6.3.3.3)	Prosthecochloris aestuarii DSM 271 Gene: Paes_2186: Dethiobiotin synthetase (EC 6.3.3.3)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1707: Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthetase (EC 6.3.3.3)
bioA	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2011: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chlorobium chlorochromatii CaD3 Gene: Cag_0083: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1613: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chlorobium limicola DSM 245 Gene: Clim_2425: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2453: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0117: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2065: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2834: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Prosthecochloris aestuarii DSM 271 Gene: Paes_2185: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1706: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
lcfA	Chlorobaculum parvum NCIB 8327 Gene: Cpar_2010: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1612: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Chlorobium limicola DSM 245 Gene: Clim_2424: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Chlorobium phaeobacteroides BS1	Chlorobium phaeobacteroides DSM 266	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2064: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2833: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Prosthecochloris aestuarii DSM 271	Prosthecochloris vibrioformis DSM 265	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SSF53335	Chlorobaculum parvum NCIB 8327	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031	Chlorobium limicola DSM 245 Gene: Clim_2423: hypothetical S-adenosyl-L-methionine-dependent methyltransferas	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_2452: hypothetical S-adenosyl-L-methionine-dependent methyltransferas	Chlorobium phaeobacteroides DSM 266	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273 Gene: Plut_2063: hypothetical S-adenosyl-L-methionine-dependent methyltransferas	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1705: hypothetical S-adenosyl-L-methionine-dependent methyltransferas	hypothetical S-adenosyl-L-methionine-dependent methyltransferas

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BirA - Chlorobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --