Regulog BirA - Chlorobiales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Chlorobiales |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BirA
- By taxonomy - Chlorobiales
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chlorobaculum parvum NCIB 8327 | 8 | 1 |
| Chlorobium chlorochromatii CaD3 | 7 | 1 |
| Chlorobium ferrooxidans DSM 13031 | 8 | 1 |
| Chlorobium limicola DSM 245 | 9 | 1 |
| Chlorobium phaeobacteroides BS1 | 8 | 1 |
| Chlorobium phaeobacteroides DSM 266 | 7 | 1 |
| Chloroherpeton thalassium ATCC 35110 | ||
| Pelodictyon luteolum DSM 273 | 9 | 1 |
| Pelodictyon phaeoclathratiforme BU-1 | 8 | 1 |
| Prosthecochloris aestuarii DSM 271 | 7 | 1 |
| Prosthecochloris vibrioformis DSM 265 | 8 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| birA |
*
Chlorobaculum parvum NCIB 8327 Site: position = -145 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cpar_2017: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Chlorobium chlorochromatii CaD3 Site: position = -45 score = 7.76215 sequence = TTATCAAC-(16)-GTTAATAA Gene: Cag_0077: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Chlorobium ferrooxidans DSM 13031 Site: position = -89 score = 8.4231 sequence = TTGTCAAC-(16)-GTTCACAT Gene: CferDRAFT_1619: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Chlorobium limicola DSM 245 Site: position = -66 score = 8.88591 sequence = TTGTCAAC-(16)-GTTGACAG Gene: Clim_2431: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Chlorobium phaeobacteroides BS1 Site: position = -93 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cphamn1_2459: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Chlorobium phaeobacteroides DSM 266 Site: position = -74 score = 8.90209 sequence = TTGTCAAC-(16)-GTTTACAA Gene: Cpha266_0111: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
|
*
Pelodictyon luteolum DSM 273 Site: position = -55 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Plut_2071: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Pelodictyon phaeoclathratiforme BU-1 Site: position = -68 score = 7.96029 sequence = TTGTAAAC-(16)-GTTCACAT Gene: Ppha_2840: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Prosthecochloris aestuarii DSM 271 Site: position = -61 score = 8.24095 sequence = TTGTCAAC-(16)-GTTGACGG Gene: Paes_2191: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
*
Prosthecochloris vibrioformis DSM 265 Site: position = -75 score = 9.3649 sequence = TTGTCAAC-(16)-GTTGACAA Gene: Cvib_1712: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
| bioB |
Gene: Cpar_2016: Biotin synthase (EC 2.8.1.6) |
Gene: Cag_0078: Biotin synthase (EC 2.8.1.6) |
Gene: CferDRAFT_1618: Biotin synthase (EC 2.8.1.6) |
Gene: Clim_2430: Biotin synthase (EC 2.8.1.6) |
Gene: Cphamn1_2458: Biotin synthase (EC 2.8.1.6) |
Gene: Cpha266_0112: Biotin synthase (EC 2.8.1.6) |
|
Gene: Plut_2070: Biotin synthase (EC 2.8.1.6) |
Gene: Ppha_2839: Biotin synthase (EC 2.8.1.6) |
Gene: Paes_2190: Biotin synthase (EC 2.8.1.6) |
Gene: Cvib_1711: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: Cpar_2015: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Cag_0079: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: CferDRAFT_1617: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Clim_2429: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Cphamn1_2457: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Cpha266_0113: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
|
Gene: Plut_2069: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Ppha_2838: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Paes_2189: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Cvib_1710: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioG |
Gene: Cpar_2014: Biotin synthesis protein bioG |
Gene: Cag_0080: Biotin synthesis protein bioG |
Gene: CferDRAFT_1616: Biotin synthesis protein bioG |
Gene: Clim_2428: Biotin synthesis protein bioG |
Gene: Cphamn1_2456: Biotin synthesis protein bioG |
Gene: Cpha266_0114: Biotin synthesis protein bioG |
|
Gene: Plut_2068: Biotin synthesis protein bioG |
Gene: Ppha_2837: Biotin synthesis protein bioG |
Gene: Paes_2188: Biotin synthesis protein bioG |
Gene: Cvib_1709: Biotin synthesis protein bioG |
Biotin synthesis protein bioG |
| bioC |
Gene: Cpar_2013: Biotin synthesis protein bioC |
Gene: Cag_0081: Biotin synthesis protein bioC |
Gene: CferDRAFT_1615: Biotin synthesis protein bioC |
Gene: Clim_2427: Biotin synthesis protein bioC |
Gene: Cphamn1_2455: Biotin synthesis protein bioC |
Gene: Cpha266_0115: Biotin synthesis protein bioC |
|
Gene: Plut_2067: Biotin synthesis protein bioC |
Gene: Ppha_2836: Biotin synthesis protein bioC |
Gene: Paes_2187: Biotin synthesis protein bioC |
Gene: Cvib_1708: Biotin synthesis protein bioC |
Biotin synthesis protein bioC |
| bioD |
Gene: Cpar_2012: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Cag_0082: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: CferDRAFT_1614: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Clim_2426: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Cphamn1_2454: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Cpha266_0116: Dethiobiotin synthetase (EC 6.3.3.3) |
|
Gene: Plut_2066: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Ppha_2835: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Paes_2186: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Cvib_1707: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
Gene: Cpar_2011: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Cag_0083: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: CferDRAFT_1613: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Clim_2425: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Cphamn1_2453: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Cpha266_0117: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
|
Gene: Plut_2065: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Ppha_2834: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Paes_2185: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Cvib_1706: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| lcfA |
Gene: Cpar_2010: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|
Gene: CferDRAFT_1612: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Clim_2424: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Gene: Plut_2064: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Ppha_2833: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| SSF53335 |
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Gene: Clim_2423: hypothetical S-adenosyl-L-methionine-dependent methyltransferas |
Gene: Cphamn1_2452: hypothetical S-adenosyl-L-methionine-dependent methyltransferas |
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Gene: Plut_2063: hypothetical S-adenosyl-L-methionine-dependent methyltransferas |
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Gene: Cvib_1705: hypothetical S-adenosyl-L-methionine-dependent methyltransferas |
hypothetical S-adenosyl-L-methionine-dependent methyltransferas |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |