Regulog BirA - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BirA
- By taxonomy - Clostridia-3
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 2 | 2 |
| Blautia hansenii DSM 20583 | 2 | 1 |
| Bryantella formatexigens DSM 14469 | 2 | 1 |
| Clostridiales bacterium 1_7_47_FAA | 3 | 1 |
| Clostridium bolteae ATCC BAA-613 | 4 | 1 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 2 | 2 |
| Dorea formicigenerans ATCC 27755 | 2 | 1 |
| Dorea longicatena DSM 13814 | 4 | 3 |
| Eubacterium eligens ATCC 27750 | 2 | 2 |
| Eubacterium rectale ATCC 33656 | 2 | 2 |
| Roseburia intestinalis L1-82 | 7 | 2 |
| Ruminococcus gnavus ATCC 29149 | 2 | 2 |
| Ruminococcus lactaris ATCC 29176 | 2 | 2 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| bioY |
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Blautia hansenii DSM 20583 Site: position = -94 score = 8.86983 sequence = TTGTAAAC-(16)-GTTGACAA Gene: BLAHAN_02475: Substrate-specific component BioY of biotin ECF transporter |
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Bryantella formatexigens DSM 14469 Site: position = -154 score = 8.86983 sequence = TTGTAAAC-(16)-GTTGACAA Site: position = -96 score = 8.4065 sequence = ATGTAAAC-(16)-GTTTACAA Gene: BRYFOR_01898: Substrate-specific component BioY of biotin ECF transporter |
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Clostridium nexile DSM 1787 Site: position = -85 score = 8.98585 sequence = TTGTTAAC-(15)-GTTGACAA Gene: CLONEX_00515: Substrate-specific component BioY of biotin ECF transporter |
*
Clostridium scindens ATCC 35704 Site: position = -142 score = 8.7149 sequence = TTGTTAAC-(15)-GTTGACAT Gene: CLOSCI_02690: Substrate-specific component BioY of biotin ECF transporter |
Gene: DORFOR_03063: Substrate-specific component BioY of biotin ECF transporter |
*2
Dorea longicatena DSM 13814 Site: position = -88 score = 8.86983 sequence = TTGTAAAC-(15)-GTTGACAA Gene: DORLON_01236: Substrate-specific component BioY of biotin ECF transporter Site: position = -123 score = 8.7149 sequence = TTGTTAAC-(15)-GTTGACAT Gene: DORLON_00987: Substrate-specific component BioY of biotin ECF transporter |
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Eubacterium eligens ATCC 27750 Site: position = -95 score = 8.79125 sequence = ATGTCAAC-(15)-GTTGACAA Gene: EUBELI_01172: Substrate-specific component BioY of biotin ECF transporter |
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Eubacterium rectale ATCC 33656 Site: position = -104 score = 8.86983 sequence = TTGTAAAC-(16)-GTTGACAA Gene: EUBREC_3289: Substrate-specific component BioY of biotin ECF transporter |
*3
Roseburia intestinalis L1-82 Site: position = -66 score = 8.86983 sequence = TTGTAAAC-(16)-GTTGACAA Gene: ROSINTL182_00207: Substrate-specific component BioY of biotin ECF transporter Site: position = -86 score = 8.44394 sequence = ATGTTAAC-(16)-GTTGACAT Site: position = -33 score = 8.9095 sequence = TTGTTAAC-(16)-GTTAACAA Gene: ROSINTL182_04738: Substrate-specific component BioY of biotin ECF transporter Gene: ROSINTL182_04737: Substrate-specific component BioY of biotin ECF transporter |
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Ruminococcus gnavus ATCC 29149 Site: position = -86 score = 8.7149 sequence = ATGTTAAC-(15)-GTTGACAA Gene: RUMGNA_01549: Substrate-specific component BioY of biotin ECF transporter |
*
Ruminococcus lactaris ATCC 29176 Site: position = -102 score = 8.98585 sequence = TTGTTAAC-(15)-GTTGACAA Gene: RUMLAC_01841: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| bioB |
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Bacteroides pectinophilus ATCC 43243 Site: position = -154 score = 8.7149 sequence = TTGTCAAC-(15)-GTTAACAT Gene: BACPEC_02754: Biotin synthase (EC 2.8.1.6) |
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Clostridium scindens ATCC 35704 Site: position = -85 score = 8.23167 sequence = CTGTAAAC-(15)-GTTGACAA Gene: CLOSCI_01529: Biotin synthase (EC 2.8.1.6) |
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Dorea formicigenerans ATCC 27755 Site: position = -110 score = 8.79125 sequence = TTGTCAAC-(16)-GTTGACAT Gene: DORFOR_03064: Biotin synthase (EC 2.8.1.6) |
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Dorea longicatena DSM 13814 Site: position = -65 score = 8.63854 sequence = ATGTTAAC-(15)-GTTAACAA Gene: DORLON_02721: Biotin synthase (EC 2.8.1.6) |
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Eubacterium eligens ATCC 27750 Site: position = -14 score = 8.5203 sequence = ATGTCAAC-(15)-GTTGACAT Gene: EUBELI_20420: Biotin synthase (EC 2.8.1.6) |
*
Eubacterium rectale ATCC 33656 Site: position = -70 score = 8.98585 sequence = TTGTTAAC-(16)-GTTGACAA Gene: EUBREC_0920: Biotin synthase (EC 2.8.1.6) |
Gene: ROSINTL182_04736: Biotin synthase (EC 2.8.1.6) |
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Ruminococcus gnavus ATCC 29149 Site: position = -84 score = 8.67745 sequence = TTGTAAAC-(15)-GTTTACAA Gene: RUMGNA_00689: Biotin synthase (EC 2.8.1.6) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -135 score = 8.59888 sequence = ATGTAAAC-(16)-GTTGACAA Gene: RUMLAC_00062: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioD |
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Gene: DORLON_01235: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: ROSINTL182_04735: Dethiobiotin synthetase (EC 6.3.3.3) |
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Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
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Gene: BLAHAN_00622: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: ROSINTL182_04734: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: RUMGNA_01526: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| PF06935 |
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Gene: BLAHAN_02474: Protein of unknown function DUF1284 |
Gene: BRYFOR_01899: Protein of unknown function DUF1284 |
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Gene: CLONEX_02146: Protein of unknown function DUF1284 |
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Gene: ROSINTL182_00208: Protein of unknown function DUF1284 |
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Protein of unknown function DUF1284 |
| CRON 2. | |||||||||||||||
| SSF54637 |
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Clostridiales bacterium 1_7_47_FAA Site: position = -97 score = 8.98585 sequence = TTGTTAAC-(15)-GTTGACAA Gene: Cbac1_010100014191: Thioesterase/thiol ester dehydrase-isomerase |
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Clostridium bolteae ATCC BAA-613 Site: position = -66 score = 8.98585 sequence = TTGTTAAC-(16)-GTTGACAA Gene: CLOBOL_00883: Thioesterase/thiol ester dehydrase-isomerase |
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Thioesterase/thiol ester dehydrase-isomerase |
| bioY2 |
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Bacteroides pectinophilus ATCC 43243 Site: position = -142 score = 8.7149 sequence = ATGTTAAC-(15)-GTTGACAA Gene: BACPEC_02755: Substrate-specific component BioY of biotin ECF transporter |
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Gene: Cbac1_010100014196: Substrate-specific component BioY of biotin ECF transporter |
Gene: CLOBOL_00884: Substrate-specific component BioY of biotin ECF transporter |
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Substrate-specific component BioY of biotin ECF transporter |
| yhfS |
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Gene: Cbac1_010100014201: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: CLOBOL_00885: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| yhfT |
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Gene: Cbac1_010100014211: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: CLOBOL_00886: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |