Regulog BirA - Clostridia-2
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BirA
- By taxonomy - Clostridia-2
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Clostridium difficile 630 | 4 | 2 |
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| bioB |
|
*
Clostridium difficile 630 Site: position = -108 score = 7.81744 sequence = TAGTAAAC-(16)-GTTGACCA Site: position = -44 score = 8.16004 sequence = AAGTAAAC-(16)-GTTGACAA Gene: CD0297: Biotin synthase (EC 2.8.1.6) |
|
Biotin synthase (EC 2.8.1.6) |
| CRON 2. | ||||
| bioY2 |
*
Clostridium bartlettii DSM 16795 Site: position = -104 score = 7.76754 sequence = ATGTTAAC-(16)-GTTAACGT Gene: CLOBAR_00985: Substrate-specific component BioY of biotin ECF transporter |
|
*
Clostridium hiranonis DSM 13275 Site: position = -152 score = 8.26883 sequence = AGGTAAAC-(16)-GTTGACAT Gene: CLOHIR_02034: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| CRON 3. | ||||
| bioY |
|
*
Clostridium difficile 630 Site: position = -132 score = 8.18508 sequence = ATGTAAAC-(16)-GTTGACAA Gene: CD2971: Substrate-specific component BioY of biotin ECF transporter |
|
Substrate-specific component BioY of biotin ECF transporter |
| yhfS |
|
Gene: CD2970: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| yhfT |
|
Gene: CD2969: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |