Regulog NikR - Thermoanaerobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By trascription factor - NikR
By taxonomy - Thermoanaerobacterales
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Anaerocellum thermophilum DSM 6725
Caldicellulosiruptor saccharolyticus DSM 8903
Carboxydothermus hydrogenoformans Z-2901
Moorella thermoacetica ATCC 39073
Thermoanaerobacter ethanolicus X514	5	1
Thermoanaerobacter italicus Ab9	5	1
Thermoanaerobacter tengcongensis MB4	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
nikR	Anaerocellum thermophilum DSM 6725	Caldicellulosiruptor saccharolyticus DSM 8903	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073	* Thermoanaerobacter ethanolicus X514 Site: position = -34 score = 9.4716 sequence = AGTGTTAT-(13)-ATAACACT Gene: Teth514_0193: Nickel responsive regulator NikR, CopG family	* Thermoanaerobacter italicus Ab9 Site: position = -34 score = 9.4716 sequence = AGTGTTAT-(13)-ATAACACT Gene: Thit_0213: Nickel responsive regulator NikR, CopG family	* Thermoanaerobacter tengcongensis MB4 Site: position = -1 score = 8.59456 sequence = AGTGCTAT-(14)-ATAGCACA Gene: TTE0250: Nickel responsive regulator NikR, CopG family	Nickel responsive regulator NikR, CopG family
nikM	Anaerocellum thermophilum DSM 6725	Caldicellulosiruptor saccharolyticus DSM 8903	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073 Gene: Moth_1863: Substrate-specific component NikM of nickel ECF transporter	Thermoanaerobacter ethanolicus X514 Gene: Teth514_0192: Substrate-specific component NikM of nickel ECF transporter	Thermoanaerobacter italicus Ab9 Gene: Thit_0212: Substrate-specific component NikM of nickel ECF transporter	Thermoanaerobacter tengcongensis MB4 Gene: TTE0249: Substrate-specific component NikM of nickel ECF transporter	Substrate-specific component NikM of nickel ECF transporter
nikN	Anaerocellum thermophilum DSM 6725	Caldicellulosiruptor saccharolyticus DSM 8903	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073	Thermoanaerobacter ethanolicus X514 Gene: Teth514_0191: Additional substrate-specific component NikN of nickel ECF transporter	Thermoanaerobacter italicus Ab9 Gene: Thit_0211: Additional substrate-specific component NikN of nickel ECF transporter	Thermoanaerobacter tengcongensis MB4 Gene: TTE0248: Additional substrate-specific component NikN of nickel ECF transporter	Additional substrate-specific component NikN of nickel ECF transporter
nikQ	Anaerocellum thermophilum DSM 6725	Caldicellulosiruptor saccharolyticus DSM 8903	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073 Gene: Moth_1862: Transmembrane component NikQ of energizing module of nickel ECF transporter	Thermoanaerobacter ethanolicus X514 Gene: Teth514_0190: Transmembrane component NikQ of energizing module of nickel ECF transporter	Thermoanaerobacter italicus Ab9 Gene: Thit_0210: Transmembrane component NikQ of energizing module of nickel ECF transporter	Thermoanaerobacter tengcongensis MB4 Gene: TTE0247: Transmembrane component NikQ of energizing module of nickel ECF transporter	Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO	Anaerocellum thermophilum DSM 6725	Caldicellulosiruptor saccharolyticus DSM 8903	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073 Gene: Moth_1861: ATPase component NikO of energizing module of nickel ECF transporter	Thermoanaerobacter ethanolicus X514 Gene: Teth514_0189: ATPase component NikO of energizing module of nickel ECF transporter	Thermoanaerobacter italicus Ab9 Gene: Thit_0209: ATPase component NikO of energizing module of nickel ECF transporter	Thermoanaerobacter tengcongensis MB4 Gene: TTE0246: ATPase component NikO of energizing module of nickel ECF transporter	ATPase component NikO of energizing module of nickel ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Thermoanaerobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --