Regulog NikR - Thermoanaerobacterales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Thermoanaerobacterales
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Anaerocellum thermophilum DSM 6725 | ||
| Caldicellulosiruptor saccharolyticus DSM 8903 | ||
| Carboxydothermus hydrogenoformans Z-2901 | ||
| Moorella thermoacetica ATCC 39073 | ||
| Thermoanaerobacter ethanolicus X514 | 5 | 1 |
| Thermoanaerobacter italicus Ab9 | 5 | 1 |
| Thermoanaerobacter tengcongensis MB4 | 5 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nikR |
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Thermoanaerobacter ethanolicus X514 Site: position = -34 score = 9.4716 sequence = AGTGTTAT-(13)-ATAACACT Gene: Teth514_0193: Nickel responsive regulator NikR, CopG family |
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Thermoanaerobacter italicus Ab9 Site: position = -34 score = 9.4716 sequence = AGTGTTAT-(13)-ATAACACT Gene: Thit_0213: Nickel responsive regulator NikR, CopG family |
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Thermoanaerobacter tengcongensis MB4 Site: position = -1 score = 8.59456 sequence = AGTGCTAT-(14)-ATAGCACA Gene: TTE0250: Nickel responsive regulator NikR, CopG family |
Nickel responsive regulator NikR, CopG family |
| nikM |
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Gene: Moth_1863: Substrate-specific component NikM of nickel ECF transporter |
Gene: Teth514_0192: Substrate-specific component NikM of nickel ECF transporter |
Gene: Thit_0212: Substrate-specific component NikM of nickel ECF transporter |
Gene: TTE0249: Substrate-specific component NikM of nickel ECF transporter |
Substrate-specific component NikM of nickel ECF transporter |
| nikN |
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Gene: Teth514_0191: Additional substrate-specific component NikN of nickel ECF transporter |
Gene: Thit_0211: Additional substrate-specific component NikN of nickel ECF transporter |
Gene: TTE0248: Additional substrate-specific component NikN of nickel ECF transporter |
Additional substrate-specific component NikN of nickel ECF transporter |
| nikQ |
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Gene: Moth_1862: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: Teth514_0190: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: Thit_0210: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: TTE0247: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Transmembrane component NikQ of energizing module of nickel ECF transporter |
| nikO |
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Gene: Moth_1861: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: Teth514_0189: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: Thit_0209: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: TTE0246: ATPase component NikO of energizing module of nickel ECF transporter |
ATPase component NikO of energizing module of nickel ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |