Regulog NrdR - Listeriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By trascription factor - NrdR
By taxonomy - Listeriaceae
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Listeria innocua Clip11262	6	2
Listeria monocytogenes EGD-e	6	2
Listeria seeligeri serovar 1/2b str. SLCC3954	6	2
Listeria welshimeri serovar 6b str. SLCC5334	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
nrdD	* Listeria innocua Clip11262 Site: position = -61 score = 4.45167 sequence = AAACTTTATCTTGTGT Site: position = -29 score = 5.41988 sequence = ACACAATATATAGTTA Gene: lin0305: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Listeria monocytogenes EGD-e Site: position = -29 score = 5.41988 sequence = ACACAATATATAGTTA Site: position = -61 score = 3.96353 sequence = AAACTTCATCTTGTGT Gene: lmo0279: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -29 score = 5.41988 sequence = ACACAATATATAGTTA Site: position = -61 score = 3.99425 sequence = AAACTTTATCTTGTGG Gene: lse_0262: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -61 score = 4.60391 sequence = AAACTTCATATTGTGT Site: position = -29 score = 5.41988 sequence = ACACAATATATAGTTA Gene: lwe0253: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG	Listeria innocua Clip11262 Gene: lin0306: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Listeria monocytogenes EGD-e Gene: lmo0280: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Listeria seeligeri serovar 1/2b str. SLCC3954 Gene: lse_0263: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Listeria welshimeri serovar 6b str. SLCC5334 Gene: lwe0254: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

CRON 2.
nrdA	* Listeria innocua Clip11262 Site: position = -176 score = 5.96353 sequence = ATACTATATATAGTAT Site: position = -338 score = 4.30862 sequence = ACACTATAAGTAGTGG Gene: lin2259: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Listeria monocytogenes EGD-e Site: position = -174 score = 5.96353 sequence = ATACTATATATAGTAT Site: position = -366 score = 4.30438 sequence = CTACTAAATATAGAAA Gene: lmo2155: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -173 score = 5.96353 sequence = ATACTATATATAGTAT Site: position = -366 score = 4.62385 sequence = CTACTAAATATAGAAT Gene: lse_2142: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -367 score = 4.68632 sequence = CTACTAAATATAGTTT Site: position = -336 score = 4.30862 sequence = ACACTATAAGTAGTGG Site: position = -174 score = 5.96353 sequence = ATACTATATATAGTAT Gene: lwe2172: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	Listeria innocua Clip11262 Gene: lin2258: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Listeria monocytogenes EGD-e Gene: lmo2154: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Listeria seeligeri serovar 1/2b str. SLCC3954 Gene: lse_2141: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Listeria welshimeri serovar 6b str. SLCC5334 Gene: lwe2171: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
lin2257	Listeria innocua Clip11262 Gene: lin2257: flavodoxin	Listeria monocytogenes EGD-e Gene: lmo2153: flavodoxin	Listeria seeligeri serovar 1/2b str. SLCC3954 Gene: lse_2140: flavodoxin	Listeria welshimeri serovar 6b str. SLCC5334 Gene: lwe2170: flavodoxin	flavodoxin
lin2256	Listeria innocua Clip11262 Gene: lin2256: thioredoxin	Listeria monocytogenes EGD-e Gene: lmo2152: thioredoxin	Listeria seeligeri serovar 1/2b str. SLCC3954 Gene: lse_2139: thioredoxin	Listeria welshimeri serovar 6b str. SLCC5334 Gene: lwe2169: thioredoxin	thioredoxin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Listeriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --