Regulog NrdR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidothermus cellulolyticus 11B | 2 | 1 |
| Frankia sp. CcI3 | 2 | 1 |
| Frankia sp. EAN1pec | 2 | 1 |
| Nakamurella multipartita DSM 44233 | 2 | 1 |
| Nocardioides sp. JS614 | 2 | 1 |
| Propionibacterium acnes KPA171202 | 6 | 3 |
| Actinosynnema mirum DSM 43827 | 4 | 2 |
| Saccharomonospora viridis DSM 43017 | 4 | 2 |
| Saccharopolyspora erythraea NRRL 2338 | 4 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nrdA |
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Propionibacterium acnes KPA171202 Site: position = -321 score = 4.15452 sequence = GCCCTTCATATAGTGA Gene: PPA2121: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Actinosynnema mirum DSM 43827 Site: position = -373 score = 5.3048 sequence = CCACAACATGTAGTGT Gene: Amir_3157: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Saccharomonospora viridis DSM 43017 Site: position = -149 score = 3.89164 sequence = CGCCCATATCTTGGGT Site: position = -117 score = 4.23629 sequence = CCACTACATGTAGACT Gene: Svir_16410: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -438 score = 4.96349 sequence = ACCCAAGATGTAGTGT Gene: SACE_1283: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
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Gene: PPA2122: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Amir_3158: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Svir_16400: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: SACE_1282: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||
| nrdR |
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Acidothermus cellulolyticus 11B Site: position = -122 score = 4.94487 sequence = CCCCAACATGTAGTAG Gene: Acel_1477: Ribonucleotide reductase transcriptional regulator NrdR |
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Frankia sp. CcI3 Site: position = -182 score = 4.87448 sequence = ACACAACATCTGGTGC Gene: Francci3_3508: Ribonucleotide reductase transcriptional regulator NrdR |
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Frankia sp. EAN1pec Site: position = -171 score = 4.7747 sequence = ACACAACATCTTGTAG Gene: Franean1_1234: Ribonucleotide reductase transcriptional regulator NrdR |
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Nakamurella multipartita DSM 44233 Site: position = -223 score = 4.85251 sequence = CCCCTACATCTAGTAC Gene: Namu_3977: Ribonucleotide reductase transcriptional regulator NrdR |
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Nocardioides sp. JS614 Site: position = -201 score = 5.01293 sequence = CCACTACATCTAGTAC Gene: Noca_3812: Ribonucleotide reductase transcriptional regulator NrdR |
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Propionibacterium acnes KPA171202 Site: position = -128 score = 4.73615 sequence = ATACCAGATGTTGTGG Site: position = -97 score = 3.99216 sequence = TCCCTATAAGTTGTGT Gene: PPA1025: Ribonucleotide reductase transcriptional regulator NrdR |
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Actinosynnema mirum DSM 43827 Site: position = -105 score = 5.22436 sequence = CCCCCACATCTAGTGG Gene: Amir_1432: Ribonucleotide reductase transcriptional regulator NrdR |
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Saccharomonospora viridis DSM 43017 Site: position = -224 score = 5.03556 sequence = CCACCACATCTAGTAG Gene: Svir_27580: Ribonucleotide reductase transcriptional regulator NrdR |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -139 score = 5.07411 sequence = CCACAACATCTAGTAG Gene: SACE_1763: Ribonucleotide reductase transcriptional regulator NrdR |
Ribonucleotide reductase transcriptional regulator NrdR |
| nrdJ |
Gene: Acel_1476: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Francci3_3507: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Franean1_1235: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Namu_3976: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Noca_3811: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: PPA1026: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Amir_1431: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Svir_27570: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: SACE_1764: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
| CRON 3. | ||||||||||
| nrdD |
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Propionibacterium acnes KPA171202 Site: position = -285 score = 5.01347 sequence = GCACCAGATGTAGGGG Site: position = -317 score = 4.22382 sequence = ACCCTTTATCTTGTGC Gene: PPA2137: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
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Gene: PPA2136: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |