Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 5 2
Arthrobacter chlorophenolicus A6 5 2
Arthrobacter sp. FB24 5 2
Beutenbergia cavernae DSM 12333 6 2
Brachybacterium faecium DSM 4810 5 2
Brevibacterium linens BL2 4 1
Clavibacter michiganensis subsp. michiganensis NCPPB 382 2 1
Janibacter sp. HTCC2649 2 1
Jonesia denitrificans DSM 20603 3 1
Kocuria rhizophila DC2201 5 2
Kytococcus sedentarius DSM 20547 4 2
Leifsonia xyli subsp. xyli str. CTCB07 2 1
Renibacterium salmoninarum ATCC 33209 6 3
Tropheryma whipplei str. Twist 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdI2
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
*
Brachybacterium faecium DSM 4810

Site:
position = -73
score = 4.0989
sequence = CTACTAGATGTGCTGC

Site:
position = -42
score = 5.24362
sequence = GCACAACATGTAGTGG

Gene: Bfae_28110: Ribonucleotide reduction protein NrdI
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
*
Kocuria rhizophila DC2201

Site:
position = -193
score = 4.82332
sequence = CAACCAGATGTAGTGG

Gene: KRH_00590: Ribonucleotide reduction protein NrdI
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -39
score = 3.87223
sequence = ACACATCATCTTGTAA

Site:
position = -71
score = 4.48779
sequence = CTACTAGATATAGTAC

Gene: RSal33209_0419: Ribonucleotide reduction protein NrdI
 
Tropheryma whipplei str. Twist
Ribonucleotide reduction protein NrdI
nrdE2
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_28100: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Brevibacterium linens BL2

Gene: BlinB01000966: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdR
*
Arthrobacter aurescens TC1

Site:
position = -143
score = 4.8551
sequence = CCACTACATGTAGTAA

Site:
position = -165
score = 4.5421
sequence = CCACTACATATATGGG

Gene: AAur_1725: Ribonucleotide reductase transcriptional regulator NrdR
*
Arthrobacter chlorophenolicus A6

Site:
position = -156
score = 4.66685
sequence = CCACTACATGTGGTAA

Site:
position = -178
score = 4.54383
sequence = ATACTACATGTAGTTG

Gene: Achl_1586: Ribonucleotide reductase transcriptional regulator NrdR
*
Arthrobacter sp. FB24

Site:
position = -104
score = 3.68903
sequence = CAGCTACATGTAGTCG

Site:
position = -136
score = 4.8551
sequence = CCACTACATGTAGTAA

Gene: Arth_1586: Ribonucleotide reductase transcriptional regulator NrdR
*
Beutenbergia cavernae DSM 12333

Site:
position = -127
score = 3.68184
sequence = CGGCCACATCTAGTAG

Site:
position = -95
score = 4.16605
sequence = CGCCTACATCTTGTGA

Gene: Bcav_2431: Ribonucleotide reductase transcriptional regulator NrdR
 
Brachybacterium faecium DSM 4810

Gene: Bfae_10640: Ribonucleotide reductase transcriptional regulator NrdR
 
Brevibacterium linens BL2

Gene: BlinB01002775: Ribonucleotide reductase transcriptional regulator NrdR
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1847: Ribonucleotide reductase transcriptional regulator NrdR
*
Janibacter sp. HTCC2649

Site:
position = -148
score = 3.37264
sequence = CATCCACATGTGGTTC

Site:
position = -180
score = 5.22382
sequence = CTACTACATCTAGTGG

Gene: JNB_00230: Ribonucleotide reductase transcriptional regulator NrdR
 
Jonesia denitrificans DSM 20603

Gene: Jden_1056: Ribonucleotide reductase transcriptional regulator NrdR
 
Kocuria rhizophila DC2201

Gene: KRH_14690: Ribonucleotide reductase transcriptional regulator NrdR
*
Kytococcus sedentarius DSM 20547

Site:
position = -72
score = 4.65189
sequence = TCTCTACATCTAGTGG

Gene: Ksed_17180: Ribonucleotide reductase transcriptional regulator NrdR
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx15110: Ribonucleotide reductase transcriptional regulator NrdR
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -90
score = 4.82393
sequence = CCACTACATCTAGTAA

Site:
position = -58
score = 3.78412
sequence = CATCTATATGTAGTTG

Gene: RSal33209_2478: Ribonucleotide reductase transcriptional regulator NrdR
 
Tropheryma whipplei str. Twist

Gene: TW237: Ribonucleotide reductase transcriptional regulator NrdR
Ribonucleotide reductase transcriptional regulator NrdR
nrdJ
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_00235: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_17170: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
CRON 3.
nrdA
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -207
score = 3.77803
sequence = CCCGCATATATAGTGA

Site:
position = -239
score = 4.92991
sequence = CCACTACATATGGGGT

Gene: CMM_2429: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
*
Kytococcus sedentarius DSM 20547

Site:
position = -498
score = 5.05536
sequence = CCACAACATGTGGTGC

Site:
position = -466
score = 3.54843
sequence = TCACCGTATATGGTGC

Gene: Ksed_21940: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = 66
score = 3.89684
sequence = CCCCGCTATATAGTGG

Site:
position = 34
score = 5.22436
sequence = CCACTAGATGTGGGGG

Gene: Lxx17790: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Renibacterium salmoninarum ATCC 33209
*
Tropheryma whipplei str. Twist

Site:
position = -60
score = 4.27498
sequence = ACACGATATATAGTAG

Site:
position = -92
score = 4.47449
sequence = ACACTATATATCGTGT

Gene: TW683: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_2428: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_21930: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx17770: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist

Gene: TW682: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 4.
nrdH
*
Arthrobacter aurescens TC1

Site:
position = -169
score = 4.8944
sequence = GCACTACATGTAGTAT

Site:
position = -201
score = 4.11171
sequence = ATACATCATCTTGGGG

Gene: AAur_2341: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Arthrobacter chlorophenolicus A6

Site:
position = -78
score = 4.8944
sequence = GCACTACATGTAGTAT

Site:
position = -110
score = 4.26141
sequence = ATACATCATCTAGGGG

Gene: Achl_2119: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Arthrobacter sp. FB24

Site:
position = -141
score = 4.8944
sequence = GCACTACATGTAGTAT

Site:
position = -173
score = 4.11171
sequence = ATACATCATCTTGGGG

Gene: Arth_2358: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Beutenbergia cavernae DSM 12333

Site:
position = -134
score = 4.43448
sequence = ACACAAGGTCTTGGGG

Site:
position = -102
score = 4.9255
sequence = CCACTAGGTGTAGTGT

Gene: Bcav_0095: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Brachybacterium faecium DSM 4810

Site:
position = -190
score = 4.44737
sequence = TCAGTACATCTAGTGG

Site:
position = -158
score = 4.9255
sequence = CCACTAGGTGTAGTGT

Gene: Bfae_24930: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Brevibacterium linens BL2

Site:
position = -151
score = 4.37034
sequence = ACACTGGATATAGGGG

Site:
position = -120
score = 5.27362
sequence = ACACAACATCTAGTGG

Gene: BlinB01000654: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
*
Jonesia denitrificans DSM 20603

Site:
position = -171
score = 4.74957
sequence = ACACTAGGTATAGTGG

Site:
position = -202
score = 3.94311
sequence = ACGCTAGGTATTGTGG

Gene: Jden_1753: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Kocuria rhizophila DC2201

Site:
position = -116
score = 5.07411
sequence = CCACTAGATGTAGTAT

Site:
position = -148
score = 4.4921
sequence = CCACATCATGTTGGGT

Gene: KRH_11580: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -74
score = 4.71848
sequence = GCACTATATGTAGTAT

Site:
position = -106
score = 4.11171
sequence = ATACATCATCTTGGGG

Gene: RSal33209_3481: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Tropheryma whipplei str. Twist
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI
 
Arthrobacter aurescens TC1

Gene: AAur_2340: Ribonucleotide reduction protein NrdI
 
Arthrobacter chlorophenolicus A6

Gene: Achl_2118: Ribonucleotide reduction protein NrdI
 
Arthrobacter sp. FB24

Gene: Arth_2357: Ribonucleotide reduction protein NrdI
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_0096: Ribonucleotide reduction protein NrdI
 
Brachybacterium faecium DSM 4810

Gene: Bfae_24920: Ribonucleotide reduction protein NrdI
 
Brevibacterium linens BL2

Gene: BlinB01000655: Ribonucleotide reduction protein NrdI
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_11590: Ribonucleotide reduction protein NrdI
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_3482: Ribonucleotide reduction protein NrdI
 
Tropheryma whipplei str. Twist
Ribonucleotide reduction protein NrdI
nrdE
 
Arthrobacter aurescens TC1

Gene: AAur_2339: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_2117: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Arthrobacter sp. FB24

Gene: Arth_2356: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_0097: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Brachybacterium faecium DSM 4810

Gene: Bfae_24910: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Brevibacterium linens BL2

Gene: BlinB01000656: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603

Gene: Jden_1752: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Kocuria rhizophila DC2201

Gene: KRH_11600: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_3483: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Tropheryma whipplei str. Twist
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
Bcav_0098
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_0098: hypothetical protein
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
hypothetical protein
nrdF
 
Arthrobacter aurescens TC1

Gene: AAur_2338: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_2116: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Arthrobacter sp. FB24

Gene: Arth_2355: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_0099: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01000657: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603

Gene: Jden_1751: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Kocuria rhizophila DC2201

Gene: KRH_11610: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_3484: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Tropheryma whipplei str. Twist
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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