Regulog NrdR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Micrococcineae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 5 | 2 |
| Arthrobacter chlorophenolicus A6 | 5 | 2 |
| Arthrobacter sp. FB24 | 5 | 2 |
| Beutenbergia cavernae DSM 12333 | 6 | 2 |
| Brachybacterium faecium DSM 4810 | 5 | 2 |
| Brevibacterium linens BL2 | 4 | 1 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 2 | 1 |
| Janibacter sp. HTCC2649 | 2 | 1 |
| Jonesia denitrificans DSM 20603 | 3 | 1 |
| Kocuria rhizophila DC2201 | 5 | 2 |
| Kytococcus sedentarius DSM 20547 | 4 | 2 |
| Leifsonia xyli subsp. xyli str. CTCB07 | 2 | 1 |
| Renibacterium salmoninarum ATCC 33209 | 6 | 3 |
| Tropheryma whipplei str. Twist | 2 | 1 |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| nrdI2 |
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Brachybacterium faecium DSM 4810 Site: position = -73 score = 4.0989 sequence = CTACTAGATGTGCTGC Site: position = -42 score = 5.24362 sequence = GCACAACATGTAGTGG Gene: Bfae_28110: Ribonucleotide reduction protein NrdI |
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Kocuria rhizophila DC2201 Site: position = -193 score = 4.82332 sequence = CAACCAGATGTAGTGG Gene: KRH_00590: Ribonucleotide reduction protein NrdI |
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Renibacterium salmoninarum ATCC 33209 Site: position = -39 score = 3.87223 sequence = ACACATCATCTTGTAA Site: position = -71 score = 4.48779 sequence = CTACTAGATATAGTAC Gene: RSal33209_0419: Ribonucleotide reduction protein NrdI |
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Ribonucleotide reduction protein NrdI |
| nrdE2 |
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Gene: Bfae_28100: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BlinB01000966: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | |||||||||||||||
| nrdR |
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Arthrobacter aurescens TC1 Site: position = -143 score = 4.8551 sequence = CCACTACATGTAGTAA Site: position = -165 score = 4.5421 sequence = CCACTACATATATGGG Gene: AAur_1725: Ribonucleotide reductase transcriptional regulator NrdR |
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Arthrobacter chlorophenolicus A6 Site: position = -156 score = 4.66685 sequence = CCACTACATGTGGTAA Site: position = -178 score = 4.54383 sequence = ATACTACATGTAGTTG Gene: Achl_1586: Ribonucleotide reductase transcriptional regulator NrdR |
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Arthrobacter sp. FB24 Site: position = -104 score = 3.68903 sequence = CAGCTACATGTAGTCG Site: position = -136 score = 4.8551 sequence = CCACTACATGTAGTAA Gene: Arth_1586: Ribonucleotide reductase transcriptional regulator NrdR |
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Beutenbergia cavernae DSM 12333 Site: position = -127 score = 3.68184 sequence = CGGCCACATCTAGTAG Site: position = -95 score = 4.16605 sequence = CGCCTACATCTTGTGA Gene: Bcav_2431: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: Bfae_10640: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: BlinB01002775: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: CMM_1847: Ribonucleotide reductase transcriptional regulator NrdR |
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Janibacter sp. HTCC2649 Site: position = -148 score = 3.37264 sequence = CATCCACATGTGGTTC Site: position = -180 score = 5.22382 sequence = CTACTACATCTAGTGG Gene: JNB_00230: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: Jden_1056: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: KRH_14690: Ribonucleotide reductase transcriptional regulator NrdR |
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Kytococcus sedentarius DSM 20547 Site: position = -72 score = 4.65189 sequence = TCTCTACATCTAGTGG Gene: Ksed_17180: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: Lxx15110: Ribonucleotide reductase transcriptional regulator NrdR |
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Renibacterium salmoninarum ATCC 33209 Site: position = -90 score = 4.82393 sequence = CCACTACATCTAGTAA Site: position = -58 score = 3.78412 sequence = CATCTATATGTAGTTG Gene: RSal33209_2478: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: TW237: Ribonucleotide reductase transcriptional regulator NrdR |
Ribonucleotide reductase transcriptional regulator NrdR |
| nrdJ |
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Gene: JNB_00235: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Gene: Ksed_17170: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| CRON 3. | |||||||||||||||
| nrdA |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -207 score = 3.77803 sequence = CCCGCATATATAGTGA Site: position = -239 score = 4.92991 sequence = CCACTACATATGGGGT Gene: CMM_2429: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Kytococcus sedentarius DSM 20547 Site: position = -498 score = 5.05536 sequence = CCACAACATGTGGTGC Site: position = -466 score = 3.54843 sequence = TCACCGTATATGGTGC Gene: Ksed_21940: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = 66 score = 3.89684 sequence = CCCCGCTATATAGTGG Site: position = 34 score = 5.22436 sequence = CCACTAGATGTGGGGG Gene: Lxx17790: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Tropheryma whipplei str. Twist Site: position = -60 score = 4.27498 sequence = ACACGATATATAGTAG Site: position = -92 score = 4.47449 sequence = ACACTATATATCGTGT Gene: TW683: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
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Gene: CMM_2428: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Ksed_21930: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Lxx17770: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: TW682: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 4. | |||||||||||||||
| nrdH |
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Arthrobacter aurescens TC1 Site: position = -169 score = 4.8944 sequence = GCACTACATGTAGTAT Site: position = -201 score = 4.11171 sequence = ATACATCATCTTGGGG Gene: AAur_2341: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Arthrobacter chlorophenolicus A6 Site: position = -78 score = 4.8944 sequence = GCACTACATGTAGTAT Site: position = -110 score = 4.26141 sequence = ATACATCATCTAGGGG Gene: Achl_2119: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Arthrobacter sp. FB24 Site: position = -141 score = 4.8944 sequence = GCACTACATGTAGTAT Site: position = -173 score = 4.11171 sequence = ATACATCATCTTGGGG Gene: Arth_2358: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Beutenbergia cavernae DSM 12333 Site: position = -134 score = 4.43448 sequence = ACACAAGGTCTTGGGG Site: position = -102 score = 4.9255 sequence = CCACTAGGTGTAGTGT Gene: Bcav_0095: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Brachybacterium faecium DSM 4810 Site: position = -190 score = 4.44737 sequence = TCAGTACATCTAGTGG Site: position = -158 score = 4.9255 sequence = CCACTAGGTGTAGTGT Gene: Bfae_24930: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Brevibacterium linens BL2 Site: position = -151 score = 4.37034 sequence = ACACTGGATATAGGGG Site: position = -120 score = 5.27362 sequence = ACACAACATCTAGTGG Gene: BlinB01000654: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Jonesia denitrificans DSM 20603 Site: position = -171 score = 4.74957 sequence = ACACTAGGTATAGTGG Site: position = -202 score = 3.94311 sequence = ACGCTAGGTATTGTGG Gene: Jden_1753: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Kocuria rhizophila DC2201 Site: position = -116 score = 5.07411 sequence = CCACTAGATGTAGTAT Site: position = -148 score = 4.4921 sequence = CCACATCATGTTGGGT Gene: KRH_11580: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Renibacterium salmoninarum ATCC 33209 Site: position = -74 score = 4.71848 sequence = GCACTATATGTAGTAT Site: position = -106 score = 4.11171 sequence = ATACATCATCTTGGGG Gene: RSal33209_3481: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
Gene: AAur_2340: Ribonucleotide reduction protein NrdI |
Gene: Achl_2118: Ribonucleotide reduction protein NrdI |
Gene: Arth_2357: Ribonucleotide reduction protein NrdI |
Gene: Bcav_0096: Ribonucleotide reduction protein NrdI |
Gene: Bfae_24920: Ribonucleotide reduction protein NrdI |
Gene: BlinB01000655: Ribonucleotide reduction protein NrdI |
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Gene: KRH_11590: Ribonucleotide reduction protein NrdI |
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Gene: RSal33209_3482: Ribonucleotide reduction protein NrdI |
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Ribonucleotide reduction protein NrdI |
| nrdE |
Gene: AAur_2339: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Achl_2117: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Arth_2356: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Bcav_0097: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Bfae_24910: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BlinB01000656: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: Jden_1752: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: KRH_11600: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: RSal33209_3483: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| Bcav_0098 |
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Gene: Bcav_0098: hypothetical protein |
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hypothetical protein |
| nrdF |
Gene: AAur_2338: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Achl_2116: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Arth_2355: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bcav_0099: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BlinB01000657: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Jden_1751: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: KRH_11610: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: RSal33209_3484: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |