Regulog Nur - Streptomycetaceae
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By TF family - FUR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces avermitilis MA-4680 | 4 | 2 |
| Streptomyces coelicolor A3(2) | 9 | 3 |
| Streptomyces griseus subsp. griseus NBRC 13350 | 6 | 2 |
| Streptomyces scabiei 87.22 | 4 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| sodF |
*
Streptomyces avermitilis MA-4680 Site: position = -41 score = 5.7296 sequence = CTTGCAAGCACTTTGCAAT Gene: SAV_5413: Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme |
*2
Streptomyces coelicolor A3(2) Gene: SCO0999: Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme Site: position = -41 score = 5.8332 sequence = GTTGCAAGGCTTTTGCAAT Gene: SCO2633: Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -60 score = 5.16149 sequence = CTTGCATATAGCTTGCAAT Gene: SGR_4906: Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme |
*
Streptomyces scabiei 87.22 Site: position = -40 score = 6.01064 sequence = GTTGCAAGTTCTTTGCAAC Gene: SCAB_59731: Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme |
Superoxide dismutase [Fe-Zn] (EC 1.15.1.1), nickel-independent isozyme |
| CRON 2. | |||||
| nikA |
|
*
Streptomyces coelicolor A3(2) Site: position = -51 score = 5.49401 sequence = ATTGCGAGTGATGTGCAAT Gene: SCO6451: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -51 score = 5.10475 sequence = ATTGCACACTGTTCGCAAT Gene: SGR_498: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) |
|
Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) |
| nikB |
|
Gene: SCO6452: Nickel ABC transporter, inner membrane component nikB |
Gene: SGR_497: Nickel ABC transporter, inner membrane component nikB |
|
Nickel ABC transporter, inner membrane component nikB |
| nikC |
|
Gene: SCO6453: Nickel ABC transporter, inner membrane component nikC |
Gene: SGR_496: Nickel ABC transporter, inner membrane component nikC |
|
Nickel ABC transporter, inner membrane component nikC |
| nikD |
|
Gene: SCO6454: Nickel ABC transporter, ATP-binding protein component nikD |
Gene: SGR_495: Nickel ABC transporter, ATP-binding protein component nikD |
|
Nickel ABC transporter, ATP-binding protein component nikD |
| nikE |
|
Gene: SCO6455: Nickel ABC transporter, ATP-binding protein component nikE |
Gene: SGR_494: Nickel ABC transporter, ATP-binding protein component nikE |
|
Nickel ABC transporter, ATP-binding protein component nikE |
| CRON 3. | |||||
| nikMN |
*
Streptomyces avermitilis MA-4680 Site: position = -38 score = 5.84197 sequence = CTTGCAAGGCATTCGCAAC Gene: SAV_3606: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Streptomyces coelicolor A3(2) Site: position = -38 score = 5.47467 sequence = CTTGCGAACGAGTTGCAAC Gene: SCO3159: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
Gene: SGR_4321: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Streptomyces scabiei 87.22 Site: position = -77 score = 5.25476 sequence = CTTGCAACAGACTCGCAAG Gene: SCAB_53361: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
| nikiQ |
Gene: SAV_3607: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: SCO3160: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: SGR_4322: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: SCAB_53371: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Transmembrane component NikQ of energizing module of nickel ECF transporter |
| nikO |
Gene: SAV_3608: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: SCO3161: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: SGR_4323: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: SCAB_53381: ATPase component NikO of energizing module of nickel ECF transporter |
ATPase component NikO of energizing module of nickel ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |