Regulog PdxW - Streptomycetaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By TF family - GntR/MocR
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces avermitilis MA-4680 | 3 | 3 |
| Streptomyces coelicolor A3(2) | 2 | 2 |
| Streptomyces griseus subsp. griseus NBRC 13350 | 2 | 2 |
| Streptomyces scabiei 87.22 | 2 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pdxO |
*
Streptomyces avermitilis MA-4680 Site: position = -36 score = 4.62692 sequence = ACTCTCCTAGCACAAA Site: position = -14 score = 4.85054 sequence = TATGCACTAATACAAT Gene: SAV_6999: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Streptomyces coelicolor A3(2) Site: position = -48 score = 4.62692 sequence = ACTCTCCTAGCACAAA Site: position = -26 score = 5.15454 sequence = TATGCACTAGTGCAAT Gene: SCO1361: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -49 score = 4.62692 sequence = ACTCTCCTAGCACAAA Site: position = -27 score = 5.15454 sequence = TATGCACTAGTGCAAT Gene: SGR_6171: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Streptomyces scabiei 87.22 Site: position = -48 score = 4.82464 sequence = ATTCTCCTAGCACAAA Site: position = -26 score = 5.15454 sequence = TATGCACTAGTGCAAT Gene: SCAB_76451: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
| CRON 2. | |||||
| pdxW |
*2
Streptomyces avermitilis MA-4680 Site: position = -25 score = 4.85054 sequence = ATTGTATTAGTGCATA Site: position = -3 score = 4.62692 sequence = TTTGTGCTAGGAGAGT Gene: SAV_7000: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family Site: position = -25 score = 4.01374 sequence = TATGTATTGATACATA Gene: SAV_6971: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
*
Streptomyces coelicolor A3(2) Site: position = -3 score = 4.62692 sequence = TTTGTGCTAGGAGAGT Site: position = -25 score = 5.15454 sequence = ATTGCACTAGTGCATA Gene: SCO1360: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -25 score = 5.15454 sequence = ATTGCACTAGTGCATA Site: position = -3 score = 4.62692 sequence = TTTGTGCTAGGAGAGT Gene: SGR_6172: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
*
Streptomyces scabiei 87.22 Site: position = -40 score = 5.15454 sequence = ATTGCACTAGTGCATA Site: position = -18 score = 4.82464 sequence = TTTGTGCTAGGAGAAT Gene: SCAB_76461: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |