Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxW - Streptomycetaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Streptomyces avermitilis MA-4680 3 3
Streptomyces coelicolor A3(2) 2 2
Streptomyces griseus subsp. griseus NBRC 13350 2 2
Streptomyces scabiei 87.22 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Streptomyces avermitilis MA-4680

Site:
position = -36
score = 4.62692
sequence = ACTCTCCTAGCACAAA

Site:
position = -14
score = 4.85054
sequence = TATGCACTAATACAAT

Gene: SAV_6999: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Streptomyces coelicolor A3(2)

Site:
position = -48
score = 4.62692
sequence = ACTCTCCTAGCACAAA

Site:
position = -26
score = 5.15454
sequence = TATGCACTAGTGCAAT

Gene: SCO1361: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Streptomyces griseus subsp. griseus NBRC 13350

Site:
position = -49
score = 4.62692
sequence = ACTCTCCTAGCACAAA

Site:
position = -27
score = 5.15454
sequence = TATGCACTAGTGCAAT

Gene: SGR_6171: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Streptomyces scabiei 87.22

Site:
position = -48
score = 4.82464
sequence = ATTCTCCTAGCACAAA

Site:
position = -26
score = 5.15454
sequence = TATGCACTAGTGCAAT

Gene: SCAB_76451: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
CRON 2.
pdxW
*2
Streptomyces avermitilis MA-4680

Site:
position = -25
score = 4.85054
sequence = ATTGTATTAGTGCATA

Site:
position = -3
score = 4.62692
sequence = TTTGTGCTAGGAGAGT

Gene: SAV_7000: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family

Site:
position = -25
score = 4.01374
sequence = TATGTATTGATACATA

Gene: SAV_6971: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
*
Streptomyces coelicolor A3(2)

Site:
position = -3
score = 4.62692
sequence = TTTGTGCTAGGAGAGT

Site:
position = -25
score = 5.15454
sequence = ATTGCACTAGTGCATA

Gene: SCO1360: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
*
Streptomyces griseus subsp. griseus NBRC 13350

Site:
position = -25
score = 5.15454
sequence = ATTGCACTAGTGCATA

Site:
position = -3
score = 4.62692
sequence = TTTGTGCTAGGAGAGT

Gene: SGR_6172: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
*
Streptomyces scabiei 87.22

Site:
position = -40
score = 5.15454
sequence = ATTGCACTAGTGCATA

Site:
position = -18
score = 4.82464
sequence = TTTGTGCTAGGAGAAT

Gene: SCAB_76461: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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