Regulog YhcF - Clostridia-3

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Multidrug resistance; Multidrug efflux
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-3
By TF family - GntR/Others
By pathway - Multidrug resistance
By pathway - Multidrug efflux

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides pectinophilus ATCC 43243
Blautia hansenii DSM 20583	3	1
Bryantella formatexigens DSM 14469
Clostridiales bacterium 1_7_47_FAA
Clostridium bolteae ATCC BAA-613
Clostridium nexile DSM 1787	5	2
Clostridium scindens ATCC 35704	5	2
Dorea formicigenerans ATCC 27755	3	1
Dorea longicatena DSM 13814
Eubacterium eligens ATCC 27750
Eubacterium rectale ATCC 33656
Roseburia intestinalis L1-82
Ruminococcus gnavus ATCC 29149	3	1
Ruminococcus lactaris ATCC 29176

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
yhcF	Bacteroides pectinophilus ATCC 43243	* Blautia hansenii DSM 20583 Site: position = -59 score = 6.28142 sequence = ATTGTACTAATCAAATAATACAGT Gene: BLAHAN_00454: Transcriptional regulator, GntR family	Bryantella formatexigens DSM 14469	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	* Clostridium nexile DSM 1787 Site: position = -40 score = 6.48162 sequence = ATTGTATTATATATTTAATACAAA Gene: CLONEX_00374: Transcriptional regulator, GntR family	* Clostridium scindens ATCC 35704 Site: position = -49 score = 6.12637 sequence = ATTGTACTATATAGATAATACAAC Gene: CLOSCI_00067: Transcriptional regulator, GntR family	* Dorea formicigenerans ATCC 27755 Site: position = -50 score = 5.10931 sequence = ATTGTATTGCTCAGATAGTACAAT Gene: DORFOR_00789: Transcriptional regulator, GntR family	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	* Ruminococcus gnavus ATCC 29149 Site: position = -53 score = 5.98397 sequence = ATTGTATTACATATATAGTACAGT Gene: RUMGNA_02108: Transcriptional regulator, GntR family	Ruminococcus lactaris ATCC 29176	Transcriptional regulator, GntR family
yhcG	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583 Gene: BLAHAN_00455: ABC-type multidrug transport system, ATPase component	Bryantella formatexigens DSM 14469	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	Clostridium nexile DSM 1787 Gene: CLONEX_00375: ABC-type multidrug transport system, ATPase component	Clostridium scindens ATCC 35704 Gene: CLOSCI_00066: ABC-type multidrug transport system, ATPase component	Dorea formicigenerans ATCC 27755 Gene: DORFOR_00790: ABC-type multidrug transport system, ATPase component	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149 Gene: RUMGNA_02107: ABC-type multidrug transport system, ATPase component	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, ATPase component
yhcI	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583 Gene: BLAHAN_00456: ABC-type multidrug transport system, permease component	Bryantella formatexigens DSM 14469	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	Clostridium nexile DSM 1787 Gene: CLONEX_00376: ABC-type multidrug transport system, permease component	Clostridium scindens ATCC 35704 Gene: CLOSCI_00065: ABC-type multidrug transport system, permease component	Dorea formicigenerans ATCC 27755 Gene: DORFOR_00791: ABC-type multidrug transport system, permease component	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750	Eubacterium rectale ATCC 33656	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149 Gene: RUMGNA_02106: ABC-type multidrug transport system, permease component	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, permease component

CRON 2.
BLAHAN_01094	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583 Gene: BLAHAN_01094: ABC-type multidrug transport system, ATPase component	Bryantella formatexigens DSM 14469	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	* Clostridium nexile DSM 1787 Site: position = -44 score = 6.05726 sequence = ATTGTATTAACTCAATAATACATT Gene: CLONEX_00079: ABC-type multidrug transport system, ATPase component	* Clostridium scindens ATCC 35704 Site: position = -53 score = 6.28565 sequence = ATTGTACTAAGTTTATAATACAGT Gene: CLOSCI_01184: ABC-type multidrug transport system, ATPase component	Dorea formicigenerans ATCC 27755 Gene: DORFOR_01918: ABC-type multidrug transport system, ATPase component	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750 Gene: EUBELI_20033: ABC-type multidrug transport system, ATPase component	Eubacterium rectale ATCC 33656 Gene: EUBREC_0968: ABC-type multidrug transport system, ATPase component	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149 Gene: RUMGNA_01315: ABC-type multidrug transport system, ATPase component	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, ATPase component
BLAHAN_01093	Bacteroides pectinophilus ATCC 43243	Blautia hansenii DSM 20583 Gene: BLAHAN_01093: ABC-type multidrug transport system, permease component	Bryantella formatexigens DSM 14469	Clostridiales bacterium 1_7_47_FAA	Clostridium bolteae ATCC BAA-613	Clostridium nexile DSM 1787 Gene: CLONEX_00080: ABC-type multidrug transport system, permease component	Clostridium scindens ATCC 35704 Gene: CLOSCI_01183: ABC-type multidrug transport system, permease component	Dorea formicigenerans ATCC 27755 Gene: DORFOR_01919: ABC-type multidrug transport system, permease component	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750 Gene: EUBELI_20032: ABC-type multidrug transport system, permease component	Eubacterium rectale ATCC 33656 Gene: EUBREC_0969: ABC-type multidrug transport system, permease component	Roseburia intestinalis L1-82	Ruminococcus gnavus ATCC 29149 Gene: RUMGNA_01316: ABC-type multidrug transport system, permease component	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YhcF - Clostridia-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --