Regulog YtrA - Clostridia-3

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Multidrug resistance; Multidrug efflux; Antibiotic resistance
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-3
By TF family - GntR/Others
By pathway - Multidrug resistance
By pathway - Multidrug efflux
By pathway - Antibiotic resistance

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides pectinophilus ATCC 43243	1	1
Blautia hansenii DSM 20583	3	1
Bryantella formatexigens DSM 14469	3	1
Clostridiales bacterium 1_7_47_FAA	3	1
Clostridium bolteae ATCC BAA-613	3	1
Clostridium nexile DSM 1787
Clostridium scindens ATCC 35704
Dorea formicigenerans ATCC 27755
Dorea longicatena DSM 13814
Eubacterium eligens ATCC 27750	3	1
Eubacterium rectale ATCC 33656	3	1
Roseburia intestinalis L1-82	3	1
Ruminococcus gnavus ATCC 29149
Ruminococcus lactaris ATCC 29176

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
ytrA	* Bacteroides pectinophilus ATCC 43243 Site: position = -50 score = 6.44856 sequence = AACTGTATTAATCGTACTAATACAGTT Gene: BACPEC_03005: Transcriptional regulator, GntR family	* Blautia hansenii DSM 20583 Site: position = -35 score = 6.41614 sequence = AAGTGTACTAGGATACATAGTACACAC Gene: BLAHAN_02527: Transcriptional regulator, GntR family	* Bryantella formatexigens DSM 14469 Site: position = -51 score = 6.26909 sequence = AGGTGTACTAACATGAATAATACACTT Gene: BRYFOR_04902: Transcriptional regulator, GntR family	* Clostridiales bacterium 1_7_47_FAA Site: position = -62 score = 6.68683 sequence = AACTGTACTAATATAATTAATACAGTC Gene: Cbac1_010100025257: Transcriptional regulator, GntR family	* Clostridium bolteae ATCC BAA-613 Site: position = -65 score = 6.22047 sequence = AACTGTATTAATATACTTAATACAGAT Gene: CLOBOL_00493: Transcriptional regulator, GntR family	Clostridium nexile DSM 1787	Clostridium scindens ATCC 35704	Dorea formicigenerans ATCC 27755	Dorea longicatena DSM 13814	* Eubacterium eligens ATCC 27750 Site: position = -77 score = 6.99764 sequence = AACTGTACTAATTAACATAGTACAGTT Gene: EUBELI_00141: Transcriptional regulator, GntR family	* Eubacterium rectale ATCC 33656 Site: position = -119 score = 5.19011 sequence = AGGTGTATCACGTTGGATAGTACACTG Gene: EUBREC_2290: Transcriptional regulator, GntR family	* Roseburia intestinalis L1-82 Site: position = -49 score = 4.89229 sequence = GACCGTATGATAGAAAATAGTACGGTT Gene: ROSINTL182_02006: Transcriptional regulator, GntR family	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	Transcriptional regulator, GntR family
ytrB	Bacteroides pectinophilus ATCC 43243 Gene: BACPEC_03004: ABC-type multidrug transport system, ATPase component	Blautia hansenii DSM 20583 Gene: BLAHAN_02526: ABC-type multidrug transport system, ATPase component	Bryantella formatexigens DSM 14469 Gene: BRYFOR_04903: ABC-type multidrug transport system, ATPase component	Clostridiales bacterium 1_7_47_FAA Gene: Cbac1_010100025262: ABC-type multidrug transport system, ATPase component	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_00492: ABC-type multidrug transport system, ATPase component	Clostridium nexile DSM 1787 Gene: CLONEX_03949: ABC-type multidrug transport system, ATPase component	Clostridium scindens ATCC 35704	Dorea formicigenerans ATCC 27755	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750 Gene: EUBELI_00142: ABC-type multidrug transport system, ATPase component	Eubacterium rectale ATCC 33656 Gene: EUBREC_2289: ABC-type multidrug transport system, ATPase component	Roseburia intestinalis L1-82 Gene: ROSINTL182_02007: ABC-type multidrug transport system, ATPase component	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ABC-type multidrug transport system, ATPase component
ytrD	Bacteroides pectinophilus ATCC 43243 Gene: BACPEC_03003: ABC-type transport system, permease component	Blautia hansenii DSM 20583 Gene: BLAHAN_02525: ABC-type transport system, permease component	Bryantella formatexigens DSM 14469 Gene: BRYFOR_04904: ABC-type transport system, permease component	Clostridiales bacterium 1_7_47_FAA Gene: Cbac1_010100025267: ABC-type transport system, permease component	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_00491: ABC-type transport system, permease component	Clostridium nexile DSM 1787 Gene: CLONEX_03950: ABC-type transport system, permease component	Clostridium scindens ATCC 35704	Dorea formicigenerans ATCC 27755	Dorea longicatena DSM 13814	Eubacterium eligens ATCC 27750 Gene: EUBELI_00143: ABC-type transport system, permease component	Eubacterium rectale ATCC 33656 Gene: EUBREC_2288: ABC-type transport system, permease component	Roseburia intestinalis L1-82 Gene: ROSINTL182_02008: ABC-type transport system, permease component	Ruminococcus gnavus ATCC 29149	Ruminococcus lactaris ATCC 29176	ABC-type transport system, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YtrA - Clostridia-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --