Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LndYR - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Antibiotic resistance
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827 3 1
Saccharomonospora viridis DSM 43017 3 1
Saccharopolyspora erythraea NRRL 2338 3 1
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Frankia sp. EAN1pec 3 1
Nakamurella multipartita DSM 44233 4 2
Nocardioides sp. JS614
Propionibacterium acnes KPA171202
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lndYR
*
Actinosynnema mirum DSM 43827

Site:
position = -53
score = 3.83996
sequence = GGTGTACCTGTTATCTAGTGTCTT

Gene: Amir_6371: Transcriptional regulator of landomycin production, GntR family
*
Saccharomonospora viridis DSM 43017

Site:
position = -42
score = 4.50651
sequence = GGTTACCTACATGACTAATGAACC

Gene: Svir_39240: Transcriptional regulator of landomycin production, GntR family
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -44
score = 3.7268
sequence = ATTATCCTATGGTCATAGGTAATT

Gene: SACE_7195: Transcriptional regulator of landomycin production, GntR family
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
*
Frankia sp. EAN1pec

Site:
position = -204
score = 3.52427
sequence = GAACCATCAGCGACCTAATGAACA

Gene: Franean1_1345: Transcriptional regulator of landomycin production, GntR family
*2
Nakamurella multipartita DSM 44233

Site:
position = -28
score = 5.99896
sequence = ATTGCACTAGTTGAGTAGTGTAAT

Gene: Namu_2305: Transcriptional regulator of landomycin production, GntR family

Site:
position = -27
score = 5.38685
sequence = GGTACACTAGTTAACTAGTCTTCT

Gene: Namu_3575: Transcriptional regulator of landomycin production, GntR family
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Transcriptional regulator of landomycin production, GntR family
lndWA
 
Actinosynnema mirum DSM 43827

Gene: Amir_6370: Landomycin ABC transporter, ATP-binding protein
 
Saccharomonospora viridis DSM 43017

Gene: Svir_39230: Landomycin ABC transporter, ATP-binding protein
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_7194: Landomycin ABC transporter, ATP-binding protein
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec

Gene: Franean1_1344: Landomycin ABC transporter, ATP-binding protein
 2
Nakamurella multipartita DSM 44233

Gene: Namu_2306: Landomycin ABC transporter, ATP-binding protein

Gene: Namu_3574: Landomycin ABC transporter, ATP-binding protein
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Landomycin ABC transporter, ATP-binding protein
lndWP
 
Actinosynnema mirum DSM 43827

Gene: Amir_6369: Landomycin ABC transporter, permease protein
 
Saccharomonospora viridis DSM 43017

Gene: Svir_39220: Landomycin ABC transporter, permease protein
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_7193: Landomycin ABC transporter, permease protein
 
Acidothermus cellulolyticus 11B
 
Frankia sp. CcI3
 
Frankia sp. EAN1pec

Gene: Franean1_1343: Landomycin ABC transporter, permease protein
 
Nakamurella multipartita DSM 44233
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Landomycin ABC transporter, permease protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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