Regulog SCO1410 - Streptomycetaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Streptomycetaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Streptomyces avermitilis MA-4680	4	2
Streptomyces coelicolor A3(2)	10	4
Streptomyces griseus subsp. griseus NBRC 13350
Streptomyces scabiei 87.22	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
SCF51A.18c	Streptomyces avermitilis MA-4680	* Streptomyces coelicolor A3(2) Site: position = -131 score = 5.73459 sequence = GATCGTTCAACGATC Site: position = -251 score = 5.73459 sequence = GATCGTTGAACGATC Gene: SCO0440: FIG015373: Membrane protein	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces scabiei 87.22	FIG015373: Membrane protein
SCF51A.17c	Streptomyces avermitilis MA-4680	Streptomyces coelicolor A3(2) Gene: SCO0439: FIG001614: Membrane protein	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces scabiei 87.22	FIG001614: Membrane protein
pcp	Streptomyces avermitilis MA-4680	Streptomyces coelicolor A3(2) Gene: SCO0438: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces scabiei 87.22	Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
SCF51A.15c	Streptomyces avermitilis MA-4680	Streptomyces coelicolor A3(2) Gene: SCO0437: conserved hypothetical protein SCF51A.15c	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces scabiei 87.22	conserved hypothetical protein SCF51A.15c

CRON 2.
SCO1410	* Streptomyces avermitilis MA-4680 Site: position = -65 score = 5.73459 sequence = GATCGTTGAACGATC Gene: SAV_6942: Transcriptional regulator, GntR family	* Streptomyces coelicolor A3(2) Site: position = -65 score = 5.73459 sequence = GATCGTTCAACGATC Gene: SCO1410: Transcriptional regulator, GntR family	Streptomyces griseus subsp. griseus NBRC 13350	* Streptomyces scabiei 87.22 Site: position = -64 score = 5.73459 sequence = GATCGTTGAACGATC Gene: SCAB_76011: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

CRON 3.
COG2814	* Streptomyces avermitilis MA-4680 Site: position = -205 score = 5.73459 sequence = GATCGTTCAACGATC Gene: SAV_6941: Major facilitator superfamily transporter	* Streptomyces coelicolor A3(2) Site: position = -87 score = 5.73459 sequence = GATCGTTGAACGATC Gene: SCO1411: Major facilitator superfamily transporter	Streptomyces griseus subsp. griseus NBRC 13350	* Streptomyces scabiei 87.22 Site: position = -126 score = 5.73459 sequence = GATCGTTCAACGATC Gene: SCAB_76001: Major facilitator superfamily transporter	Major facilitator superfamily transporter
COG4336	Streptomyces avermitilis MA-4680 Gene: SAV_6940: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Streptomyces coelicolor A3(2) Gene: SCO1412: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces scabiei 87.22 Gene: SCAB_75991: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
COG1540	Streptomyces avermitilis MA-4680 Gene: SAV_6939: Uncharacterized proteins, homologs of lactam utilization protein B	* Streptomyces coelicolor A3(2) Site: position = -150 score = 5.73459 sequence = GATCGTTGAACGATC Site: position = -30 score = 5.73459 sequence = GATCGTTCAACGATC Gene: SCO0441: Uncharacterized proteins, homologs of lactam utilization protein B	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_3193: Uncharacterized proteins, homologs of lactam utilization protein B	Streptomyces scabiei 87.22 Gene: SCAB_75981: Uncharacterized proteins, homologs of lactam utilization protein B	Uncharacterized proteins, homologs of lactam utilization protein B
alhA	Streptomyces avermitilis MA-4680 Gene: SAV_6938: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Streptomyces coelicolor A3(2) Gene: SCO0442: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_3192: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Streptomyces scabiei 87.22 Gene: SCAB_75971: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhB	Streptomyces avermitilis MA-4680 Gene: SAV_6937: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Streptomyces coelicolor A3(2) Gene: SCO0443: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_3191: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Streptomyces scabiei 87.22 Gene: SCAB_75961: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SCO1410 - Streptomycetaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --